View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20425_low_22 (Length: 284)
Name: NF20425_low_22
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_22 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 19394725 - 19394471
Alignment:
| Q |
18 |
cttaattggcaagacctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394725 |
cttaattggcaggacctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgc |
19394626 |
T |
|
| Q |
118 |
atgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394625 |
atgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagag |
19394526 |
T |
|
| Q |
218 |
tcttcatcttcattctctgtagatggctttgcagttttaggattttcttcttctg |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394525 |
tcttcatcttcattctctgtagatggctttgcagttttaggattttcttcttctg |
19394471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 33 - 268
Target Start/End: Complemental strand, 19465913 - 19465678
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
19465913 |
ctcaatttctgcgaaagctatttaactttaccgtcaaagtaacatagagcttgtcacctattccatatataaaccgaaagtatgcatgcctccatttcct |
19465814 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| || || ||||| |||||| |
|
|
| T |
19465813 |
aataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccgtccttagatacaatgattcttttatcgattcatcatcctcattc |
19465714 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttcttct |
268 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
19465713 |
tctgtagatggcagtgcagttttaggattttcttct |
19465678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 33 - 268
Target Start/End: Complemental strand, 19382454 - 19382219
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
19382454 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatagataaaccgaaagtatgcatgcctccatttcct |
19382355 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || ||| ||||||| || |||||||||||| |
|
|
| T |
19382354 |
aataagaaataaagaaccacaaatcccccaaaaacctactccaaatccaactcccatgcctagatacaacgactctattatagattcatcatcttcattc |
19382255 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttcttct |
268 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
19382254 |
tctgtagatggcagtgcagttttaggattttcttct |
19382219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 24 - 274
Target Start/End: Original strand, 18872308 - 18872558
Alignment:
| Q |
24 |
tggcaagacctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcct |
123 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
18872308 |
tggcaggagctcaatatctgcgaaagctatttaactttatcatcaaagtaacatagagcttgtcacctactccatatataaaccaaaagtatgcatgcct |
18872407 |
T |
|
| Q |
124 |
ccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||||||| | | | |
|
|
| T |
18872408 |
ccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgccaagatacattgattctcttatagaagcataa |
18872507 |
T |
|
| Q |
224 |
tcttcattctctgtagatggctttgcagttttaggattttcttcttctgtg |
274 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18872508 |
tcttcattctttgtagatggctttgcagttttaggattttcttcttttgtg |
18872558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 46 - 271
Target Start/End: Original strand, 17725989 - 17726214
Alignment:
| Q |
46 |
aaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaa |
145 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
17725989 |
aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa |
17726088 |
T |
|
| Q |
146 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |
|
|
| T |
17726089 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttcattctttgtagacaact |
17726188 |
T |
|
| Q |
246 |
ttgcagttttaggattttcttcttct |
271 |
Q |
| |
|
||| | |||||||||||||||||||| |
|
|
| T |
17726189 |
ttgaatttttaggattttcttcttct |
17726214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 46 - 271
Target Start/End: Original strand, 19027218 - 19027443
Alignment:
| Q |
46 |
aaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaa |
145 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||| || |||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
19027218 |
aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa |
19027317 |
T |
|
| Q |
146 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |
|
|
| T |
19027318 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttcattctttgtagacaact |
19027417 |
T |
|
| Q |
246 |
ttgcagttttaggattttcttcttct |
271 |
Q |
| |
|
||| | |||||||||||||||||||| |
|
|
| T |
19027418 |
ttgaatttttaggattttcttcttct |
19027443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 34 - 270
Target Start/End: Complemental strand, 19456856 - 19456621
Alignment:
| Q |
34 |
tcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttccta |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | ||||||| | ||| ||| |||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
19456856 |
tcaatttctgcgaaagctatttaactttaccatcaaagttacatagaccctgttacccactccatatataacccaaaagtatgcatgcctccatttccta |
19456757 |
T |
|
| Q |
134 |
ataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||| |||||||||| ||||||||| ||| |
|
|
| T |
19456756 |
ataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccaagccgagaaacattgattctcttatagagtcatcatcttcaatct |
19456657 |
T |
|
| Q |
234 |
ctgtagatggctttgcagttttaggattttcttcttc |
270 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
19456656 |
ctgtggatgg-gttgcagtcttaggattttcttcttc |
19456621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 33 - 268
Target Start/End: Complemental strand, 18017583 - 18017348
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||| | ||||| || ||| ||| ||||||||||||| |||||| |||||||||||||||| || |
|
|
| T |
18017583 |
ctcaacttctacgaaagctatttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttct |
18017484 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
18017483 |
aatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaagccaactcccatgcctagatacaatgattcttttatagattcatcatcctcattc |
18017384 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttcttct |
268 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18017383 |
tctgtagatggcattgcagttttaggattttcttct |
18017348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 19352947 - 19352717
Alignment:
| Q |
39 |
ttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataag |
138 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||| | ||||| ||| ||| ||| ||||||||||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
19352947 |
ttctacgaaagctatttaactttaccattaaagttacataaagcctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaataag |
19352848 |
T |
|
| Q |
139 |
aaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgta |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
19352847 |
aaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatgcctagatacaatgattcttttatggagtcatcaccttcattctctgtt |
19352748 |
T |
|
| Q |
239 |
gatggctttgcagttttaggattttcttctt |
269 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |
|
|
| T |
19352747 |
gatggcgttgcagtcttaggattttcttctt |
19352717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 17943515 - 17943279
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||||| ||||| || |||| || |||| |||||||||||||||||||||||| || |
|
|
| T |
17943515 |
ctcagtttctgcgaaagctatttaactttacgatcaaagtaacatagagtttgtcgcccactctatcaataaaccgaaagcatgcatgcctccattttct |
17943416 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||| || || |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
17943415 |
aataaaaaacaaagaaccacaaatcccccaaaaacctgctgcaaatccaacccccatgccaaggtacagtgattcttttatagagtcatcatcttcattc |
17943316 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttcttctt |
269 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| |
|
|
| T |
17943315 |
tctgtggacggctttgcagttttaggattttcttctt |
17943279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 33 - 274
Target Start/End: Complemental strand, 18166717 - 18166476
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||| || |||| ||||||| ||||||| |||||||| || |
|
|
| T |
18166717 |
ctcagtttctgagaaagctatttaactttacgttcaaagtaacatagagcttgtcaccaactctatcaataaaccgaaagtatgcatgtctccattttct |
18166618 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
18166617 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgcctaggtacaaccattctcttatagagtcatcatcttcattc |
18166518 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttcttcttctgtg |
274 |
Q |
| |
|
| |||||| ||| |||||||||||| ||||| ||||| |||| |
|
|
| T |
18166517 |
tttgtagacggcgttgcagttttagaatttttttcttttgtg |
18166476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 56 - 269
Target Start/End: Complemental strand, 19335550 - 19335337
Alignment:
| Q |
56 |
aactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccacaaa |
155 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||| |||| ||| | || ||||||| | |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19335550 |
aactttacgatcaaagtaacatagatcttgtcacccactctataaacaaaccgaaagtaagcatgcctccattttctaataagaaacaaagaaccacaaa |
19335451 |
T |
|
| Q |
156 |
tcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagtttt |
255 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
19335450 |
tcccccagaaacctgctgcaaatccaactctcatccctagatacaatgattctcttaaagagtcgtcatcttcattatctgttgatggcattgcagtttt |
19335351 |
T |
|
| Q |
256 |
aggattttcttctt |
269 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19335350 |
aggattttcttctt |
19335337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 53 - 269
Target Start/End: Complemental strand, 19426231 - 19426015
Alignment:
| Q |
53 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
152 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||| |||| |||| || | || ||||||| |||||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
19426231 |
tttaactttacgatcaaagtaacatagatcttatcacgcactctatcaacaaaccgaaagtatgcatgcttccattttctaataaggaacaaagaaccac |
19426132 |
T |
|
| Q |
153 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
19426131 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttcattctttgtagatggtgttgcagt |
19426032 |
T |
|
| Q |
253 |
tttaggattttcttctt |
269 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
19426031 |
tttaggattttcttctt |
19426015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 53 - 269
Target Start/End: Complemental strand, 19355256 - 19355040
Alignment:
| Q |
53 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
152 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||||| |||| || | || ||||||| |||||||||||||||| ||||| ||||||||||||| | |
|
|
| T |
19355256 |
tttaactttacgatcaaagtaacatagatcttgtcacgcactctatcaacaaaccgaaagtatgcatgcctccattttctaattagaaacaaagaacggc |
19355157 |
T |
|
| Q |
153 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| | |||||||||| ||||||| |
|
|
| T |
19355156 |
aaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctttgatagagtcgtcatcttcattttttgtagatggcattgcagt |
19355057 |
T |
|
| Q |
253 |
tttaggattttcttctt |
269 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
19355056 |
tttaggattttcttctt |
19355040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 14894862 - 14895070
Alignment:
| Q |
66 |
tcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaa |
165 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| || |
|
|
| T |
14894862 |
tcaaagtaacatagagcttgtcacctactccatcaataaaccgaaagtatgcatgcctccattttctaataagaaacaaagaaccagaaatcccccaaaa |
14894961 |
T |
|
| Q |
166 |
acctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagttttaggattttct |
265 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||| ||||||| |||||||||| || |||||| ||| |||| | |||||| |||| |||||||||||| |
|
|
| T |
14894962 |
acctactgcaaatccaattcccatgccaagatacattgattctcttatagagtcctcgtcttcaatctgtgtaaaaggcttttcagtgttaggattttct |
14895061 |
T |
|
| Q |
266 |
tcttctgtg |
274 |
Q |
| |
|
||||||||| |
|
|
| T |
14895062 |
tcttctgtg |
14895070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 17951384 - 17951181
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||| | ||||||||| ||| ||| ||||||||||||| ||||||| |||||||||||||||| | |
|
|
| T |
17951384 |
ctcaacttctgcaaaagctatttaactttaccttcaaagttacatagagcctgttacccactccatatataaaccgaaagtatgcatgcctccattttcg |
17951285 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||| ||| || ||||| |||||| |
|
|
| T |
17951284 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaaggtacaatgattcttttagagattcatcatcctcattc |
17951185 |
T |
|
| Q |
233 |
tctg |
236 |
Q |
| |
|
|||| |
|
|
| T |
17951184 |
tctg |
17951181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 37 - 274
Target Start/End: Complemental strand, 25464610 - 25464370
Alignment:
| Q |
37 |
atttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaata |
136 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| |||||||||| ||||||| ||||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
25464610 |
atttctgcgaaagtggtttaactttacgatcaaagtaacatagagtttgtcactcactccattaataaaccgaaagtatgcatgcctccatttcctaata |
25464511 |
T |
|
| Q |
137 |
agaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttc---atcttcattct |
233 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| |
|
|
| T |
25464510 |
aaaaacaaagaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagatacaatgattcttttatagagtcatcgttatcttcactct |
25464411 |
T |
|
| Q |
234 |
ctgtagatggctttgcagttttaggattttcttcttctgtg |
274 |
Q |
| |
|
|| ||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
25464410 |
ttgcagacggtgttgcatttttaggattttcttcttttgtg |
25464370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 18117519 - 18117312
Alignment:
| Q |
31 |
acctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttc |
130 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| ||||| |||||||||| | |||||| |||| || | | ||||||| | ||||||||||||||| |
|
|
| T |
18117519 |
acctcagtttcagcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttc |
18117420 |
T |
|
| Q |
131 |
ctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcat |
230 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| || |||||||||| |
|
|
| T |
18117419 |
ctaataagaaacatagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctagatacaatgactctcttatagattcatcatcttcat |
18117320 |
T |
|
| Q |
231 |
tctctgta |
238 |
Q |
| |
|
|||||||| |
|
|
| T |
18117319 |
tctctgta |
18117312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 19401275 - 19401084
Alignment:
| Q |
45 |
gaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaa |
144 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||||||| ||| ||| ||||||||||| | |||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
19401275 |
gaaagctatttaactttaccatcaaagttacatagagcctgttacccactccatatatgaaccgaaaatatgcatgcctccattttctaatgagaaacaa |
19401176 |
T |
|
| Q |
145 |
agaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| || || ||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
19401175 |
agaaccacaaatcccccagaaacctactgcaaatcccactcccatgccaaggtacaacgattcttttatagattcgtcatcttcattctctg |
19401084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 19415745 - 19415509
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| |||||||||| ||| | | |||| || |||| ||| ||| |||||||||| ||||| || |
|
|
| T |
19415745 |
ctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttct |
19415646 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| || | |||||||||| |
|
|
| T |
19415645 |
aataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatacaatgaatctttcatagaatcataatcttcattc |
19415546 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttcttctt |
269 |
Q |
| |
|
| ||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
19415545 |
tttgttgatggcgttgcagttgtaggattttcttctt |
19415509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 19377195 - 19377000
Alignment:
| Q |
18 |
cttaattggcaagacctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgc |
117 |
Q |
| |
|
||||| ||||| || || ||||||| |||| || ||||||||||| ||||| |||||||||| ||||||||||||| || |||| | ||||| |||| |
|
|
| T |
19377195 |
cttaactggcaggagcttaatttctttgaaacctgtttaactttacgatcaaagtaacatagagtttgtcacctactctattaataaactgaaagtatgc |
19377096 |
T |
|
| Q |
118 |
atgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
19377095 |
atgcctccatttcctaataagaaacaaagaaccgcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctcttat |
19377000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 18109991 - 18109790
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
||||| ||| || ||||||||| ||||||||| |||| | ||||||||| ||| ||| ||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
18109991 |
ctcaacttcagcaaaagctattcaactttaccatcaatgttacatagagcctgttacccactccatatataaaacgaaagtatgcatgcctccatttcct |
18109892 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||| || ||||| |||||| |
|
|
| T |
18109891 |
gataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaaggtacaatgattcttttatagattcatcatcctcattc |
18109792 |
T |
|
| Q |
233 |
tc |
234 |
Q |
| |
|
|| |
|
|
| T |
18109791 |
tc |
18109790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 19462741 - 19462536
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| |||||||||| |||||| |||| || | | ||||||| | |||||||||||||||| |
|
|
| T |
19462741 |
ctcagtttctgcgaaagctatttaactttacggtcaaagtaacatagagaaagtcacccactctatcaactaaccgaaagtacgcatgcctccatttccg |
19462642 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||| || ||| ||||||| || |||||||||||| |
|
|
| T |
19462641 |
aataagaaacaaagaaccacaaatgccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatcatcttcattc |
19462542 |
T |
|
| Q |
233 |
tctgta |
238 |
Q |
| |
|
|||||| |
|
|
| T |
19462541 |
tctgta |
19462536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 18148369 - 18148176
Alignment:
| Q |
43 |
gcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaac |
142 |
Q |
| |
|
||||||||||||||||||||| ||| | |||||||||| | |||||| |||| || | | ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
18148369 |
gcgaaagctatttaactttacgatcacagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcctaataagaaac |
18148270 |
T |
|
| Q |
143 |
aaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| || ||| ||||||| || |||||||||||||||| |
|
|
| T |
18148269 |
aaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatcatcttcattctctg |
18148176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 19438497 - 19438304
Alignment:
| Q |
43 |
gcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaac |
142 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| || | ||||| ||| || | | ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
19438497 |
gcgaaagctatttaactttactatcaaagtaacataaagatagtcacacactgtatcaactaaccgaaagtacgcatgcctccatttcctaataagaaac |
19438398 |
T |
|
| Q |
143 |
aaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctg |
236 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||| ||||||| || |||||||||||||||| |
|
|
| T |
19438397 |
atagaaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaacgactctcttatagattcatcatcttcattctctg |
19438304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 266
Target Start/End: Complemental strand, 16678768 - 16678535
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||| | ||||| |||||||| || ||||||| |||| || || ||| |||||||||||||| |
|
|
| T |
16678768 |
ctcaacttctgtgaaagttatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccatttcct |
16678669 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| || ||||||||||||||||||| || || | ||||||| | |
|
|
| T |
16678668 |
aataagaaacaaagaaccacaaataccccagaaacctaccgcaaaaccaactcccaagcccagatacaatgattcttttagagtatcattatcttcactt |
16678569 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttctt |
266 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |
|
|
| T |
16678568 |
tctgtagatggtgttgtgtttttaggattttctt |
16678535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 18105057 - 18104854
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| ||||| |||||||||| | |||||| |||| || | | ||||||| ||||||||||||||||||| |
|
|
| T |
18105057 |
ctcagtttcggcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctattaactaaccgaaagtatgcatgcctccatttcct |
18104958 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
||||||||||| |||||| |||||||| |||| |||||||||||||| |||||||| |||| |||||| || ||| ||||||| || |||| ||||||| |
|
|
| T |
18104957 |
aataagaaacatagaaccgaaaatccccaagaatcctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatcattttcattc |
18104858 |
T |
|
| Q |
233 |
tctg |
236 |
Q |
| |
|
|||| |
|
|
| T |
18104857 |
tctg |
18104854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 24493221 - 24493377
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
|||| |||||| ||||||||| ||||| ||| ||||| | ||||||| | ||||||| ||||||| |||| ||| || | || |||||||||||||| |
|
|
| T |
24493221 |
ctcattttctgtgaaagctat--aacttcaccatcaaagttacatagatcctgtcacccactccatcgataaaccggtagtacgcgtgcctccatttcct |
24493318 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatcc |
191 |
Q |
| |
|
||||||||| |||| |||||| ||| ||| ||||||||| |||| ||||||||||||| |
|
|
| T |
24493319 |
aataagaaataaaggaccacacatcaaccaaaaacctactccaaacccaactcccatcc |
24493377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 24496750 - 24496823
Alignment:
| Q |
124 |
ccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagat |
197 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||| ||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
24496750 |
ccatttcctaatacgaaacaaaggaccacagatcaaccagaaacctattccaaatccaactcccatgcctagat |
24496823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 8461127 - 8460891
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||| | ||||| |||| ||| || ||||||||||||||||||| |
|
|
| T |
8461127 |
ctcaatttctgcgaaatctaattaactttaccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctccatttcct |
8461028 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
8461027 |
aataagaaacaaagaaccacaaatcccccaaaaacccactgcaaatccaactcccatgccaagatacaatgattctcttatagagtcatcatcttcattc |
8460928 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttcttctt |
269 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
8460927 |
tctgtagacggcattgcagttttaggattttcttctt |
8460891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 15537094 - 15536858
Alignment:
| Q |
33 |
ctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcct |
132 |
Q |
| |
|
||||||||||| |||| | ||||||||||| ||||| ||||||||| ||||||||||||| || ||| ||||||| |||||||||||||||| || |
|
|
| T |
15537094 |
ctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttgtcacctactttatcagtaaaccgaaagtatgcatgcctccattttct |
15536995 |
T |
|
| Q |
133 |
aataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattc |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
15536994 |
aataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactcccatccctagatacaatgattctttgttagagtcatcatcttcattc |
15536895 |
T |
|
| Q |
233 |
tctgtagatggctttgcagttttaggattttcttctt |
269 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||| |
|
|
| T |
15536894 |
tctgtggatggtgttgcggttttgggattttcttctt |
15536858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 272
Target Start/End: Original strand, 2709032 - 2709251
Alignment:
| Q |
53 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
152 |
Q |
| |
|
|||||||||| | ||||| | ||||||||||||||||||||||||| |||| |||| || ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
2709032 |
tttaactttatcatcaaagttacatagagcttgtcacctactccatcaataaaccgatagtatgtgttcctccatttcctaataagaaacaaaggaccac |
2709131 |
T |
|
| Q |
153 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagt |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| || || ||||| || || |||||||| |||| | |
|
|
| T |
2709132 |
aaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaatgattctcttatagattcgtcgtcttcttttcctctagatggcattgcctt |
2709231 |
T |
|
| Q |
253 |
tttaggattttcttcttctg |
272 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
2709232 |
tttatgattttcttcttctg |
2709251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 13665395 - 13665623
Alignment:
| Q |
41 |
ctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaa |
140 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||| ||||| || |||| || | || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13665395 |
ctgcgaaagctatttaactttaccatcaaagtaatatagagattgtcgcccactctatcaaaaaaccgaaagcatgcatgcctccattttctaataagaa |
13665494 |
T |
|
| Q |
141 |
acaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtaga |
240 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||| ||||| || || | ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
13665495 |
acaaagaaccacatatcccccagaaacctgctgcaaatccaacccccatgccaaggttcaatgattcttttatagagtcgtcatcttcattctttgtaga |
13665594 |
T |
|
| Q |
241 |
tggctttgcagttttaggattttcttctt |
269 |
Q |
| |
|
||| |||||||| ||||||||||||||| |
|
|
| T |
13665595 |
tggtgttgcagttctaggattttcttctt |
13665623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 53 - 274
Target Start/End: Complemental strand, 22127 - 21906
Alignment:
| Q |
53 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
152 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| |||| || |||| |||| || |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
22127 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
22028 |
T |
|
| Q |
153 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagt |
252 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| || ||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
22027 |
aaatcccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagt |
21928 |
T |
|
| Q |
253 |
tttaggattttcttcttctgtg |
274 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21927 |
tttaggattttcttcttctgtg |
21906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 53 - 268
Target Start/End: Original strand, 2029 - 2244
Alignment:
| Q |
53 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
152 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| |||| || |||| |||| || |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
2029 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
2128 |
T |
|
| Q |
153 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagt |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
2129 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagt |
2228 |
T |
|
| Q |
253 |
tttaggattttcttct |
268 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
2229 |
tataggattttcttct |
2244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 53 - 274
Target Start/End: Original strand, 2558 - 2780
Alignment:
| Q |
53 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
152 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| |||| || |||| |||| || |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
2558 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
2657 |
T |
|
| Q |
153 |
aaat-cccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcag |
251 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| ||||| || ||||||||||| |||||| |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
2658 |
aaatacccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcag |
2757 |
T |
|
| Q |
252 |
ttttaggattttcttcttctgtg |
274 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2758 |
ttttaggattttcttcttctgtg |
2780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 53 - 274
Target Start/End: Complemental strand, 12042 - 11821
Alignment:
| Q |
53 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
152 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| |||| || |||| |||| || |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
12042 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
11943 |
T |
|
| Q |
153 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagt |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
11942 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagt |
11843 |
T |
|
| Q |
253 |
tttaggattttcttcttctgtg |
274 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
11842 |
tttaggattttcttcttttgtg |
11821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 6944 - 6729
Alignment:
| Q |
53 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
152 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| |||| || |||| |||| || |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
6944 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
6845 |
T |
|
| Q |
153 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttatagagtcttcatcttcattctctgtagatggctttgcagt |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
6844 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctgtatatggctttgcagt |
6745 |
T |
|
| Q |
253 |
tttaggattttcttct |
268 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
6744 |
tataggattttcttct |
6729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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