View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20425_low_24 (Length: 257)

Name: NF20425_low_24
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20425_low_24
NF20425_low_24
[»] chr1 (1 HSPs)
chr1 (122-242)||(42242601-42242721)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-125)||(8247-8371)
[»] chr7 (2 HSPs)
chr7 (1-125)||(18789413-18789537)
chr7 (1-69)||(22249512-22249580)
[»] chr8 (1 HSPs)
chr8 (1-123)||(44614770-44614892)
[»] chr4 (6 HSPs)
chr4 (1-123)||(1994381-1994503)
chr4 (1-123)||(9403781-9403903)
chr4 (1-125)||(56558693-56558817)
chr4 (1-121)||(20359421-20359541)
chr4 (1-125)||(30454141-30454265)
chr4 (5-123)||(24807883-24808001)
[»] chr3 (2 HSPs)
chr3 (1-123)||(3299733-3299855)
chr3 (1-123)||(8961889-8962002)
[»] chr2 (2 HSPs)
chr2 (1-115)||(20266520-20266636)
chr2 (61-101)||(36302433-36302473)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 42242601 - 42242721
Alignment:
Q  122 ctaacactcttaacgaatttctttcacgcatacaaaagaataaaagaagatttatactctttgattctatccggttaaaaattatttctttgatttttgc 221  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42242601 ctaacactcttaactaatttctttcacgcatacaaaagaagaaaagaagatctatactctttgattctatccggttaaaaattatttctttgatttttgc 42242700  T
Q  222 agctatcagttgactcaccat 242  Q
    |||||||||||||||||||||    
T  42242701 agctatcagttgactcaccat 42242721  T

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Target: scaffold0014 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 8371 - 8247
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  8371 ggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttcgaatttcaaattcccttgaattttca 8272  T
Q  101 aatgctctatccaaatacactctaa 125  Q
    ||||||||||||||| |||||||||    
T  8271 aatgctctatccaaacacactctaa 8247  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 18789413 - 18789537
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  18789413 ggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttaaattccttagaatttcaaattcccttgaattttca 18789512  T
Q  101 aatgctctatccaaatacactctaa 125  Q
    ||||||||||||||| |||||||||    
T  18789513 aatgctctatccaaacacactctaa 18789537  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22249512 - 22249580
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaatt 69  Q
    ||||||||| || |||||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  22249512 ggaattcattcaatttacccaaacaataaattttaaaaatgaaaggaattcaattgaagcatttgaatt 22249580  T

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Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 44614770 - 44614892
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||    
T  44614770 ggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaatttcaaattcccttggattttca 44614869  T
Q  101 aatgctctatccaaatacactct 123  Q
    ||||||||||||||| |||||||    
T  44614870 aatgctctatccaaacacactct 44614892  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 1994381 - 1994503
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  1994381 ggaattcattcactttacccaaacaatgaattttgaaaatgaaaggaattcaattgaagcatttgaattccttaaaatttcaaattcccttgaattttca 1994480  T
Q  101 aatgctctatccaaatacactct 123  Q
    ||||||||||||||| |||||||    
T  1994481 aatgctctatccaaacacactct 1994503  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 9403903 - 9403781
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  9403903 ggaattcattcactttacccaaacaatgaattttgaaaatgaaatgaattcaattgaagcatttgaattccttagaatttcaaattcccttgaattttca 9403804  T
Q  101 aatgctctatccaaatacactct 123  Q
    ||||||||||||||| |||||||    
T  9403803 aatgctctatccaaacacactct 9403781  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 56558817 - 56558693
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||  |||||||||||| ||||||||||||    
T  56558817 ggaattcattcactttacccaaacaatgaattttgaaaatgaaatgaattcaattgaagcatttgaattccttttaatttcaaattcccttgaattttca 56558718  T
Q  101 aatgctctatccaaatacactctaa 125  Q
    ||||||||||||||| |||||||||    
T  56558717 aatgctctatccaaacacactctaa 56558693  T

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Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 20359421 - 20359541
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||    
T  20359421 ggaattcattcactttatccaaacaaagaattttgaaaatgaaaggaattcaattgaagcatttgaattccttagaattttaaatccccttgaattttca 20359520  T
Q  101 aatgctctatccaaatacact 121  Q
    ||||||||||||||| |||||    
T  20359521 aatgctctatccaaacacact 20359541  T

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Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 30454265 - 30454141
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  30454265 ggaattcattcactttatccaaacaatgaattttgaaaatgaacgaaattcaattgaagcatttgaatttcttaggatttcaaattctcttgaattttca 30454166  T
Q  101 aatgctctatccaaatacactctaa 125  Q
    ||| ||||||||||| |||||||||    
T  30454165 aatcctctatccaaacacactctaa 30454141  T

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Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 24808001 - 24807883
Alignment:
Q  5 ttcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttcaaatg 104  Q
    ||||| ||||||| |||||||||||||||| ||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||     
T  24808001 ttcattcactttatccaaacaatgaattttaaaaattaagggaattcaattgaagcatttgaaatccttagaatttcaaattctcttggattttcaaatc 24807902  T
Q  105 ctctatccaaatacactct 123  Q
    ||| ||||||| |||||||    
T  24807901 ctccatccaaacacactct 24807883  T

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Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 3299733 - 3299855
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||| |    
T  3299733 ggaattcattcactttacctaaacaatgaatttagaaaatgaaaggaattcaattgaagcatttgaattccttaaaatttcaaattcccttaaattttta 3299832  T
Q  101 aatgctctatccaaatacactct 123  Q
    ||||||||||||||| |||||||    
T  3299833 aatgctctatccaaacacactct 3299855  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 8961889 - 8962002
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattccttagaatttcaaattctcttgaattttca 100  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||||||||         |||||||||||| |||||||||||| ||||||||||||    
T  8961889 ggaattcatttactttacccaaataatgaattttgaaaatgaaaggaattcaa---------ttgaattccttaaaatttcaaattcccttgaattttca 8961979  T
Q  101 aatgctctatccaaatacactct 123  Q
    ||||||||||||||| |||||||    
T  8961980 aatgctctatccaaacacactct 8962002  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 20266520 - 20266636
Alignment:
Q  1 ggaattcatccactttacccaaacaatgaattttgaaaatgaaaggaattcaaatgaagcatttgaattcct--tagaatttcaaattctcttgaatttt 98  Q
    ||||||||| ||| |  ||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||  ||||||||||||||| ||||||||||    
T  20266520 ggaattcattcacgtagcccaaacaatgaattttaaaaataaaagaaattcaattgaagcatttgaattccttatagaatttcaaattcccttgaatttt 20266619  T
Q  99 caaatgctctatccaaa 115  Q
    |||||  ||||||||||    
T  20266620 caaatcatctatccaaa 20266636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 36302473 - 36302433
Alignment:
Q  61 atttgaattccttagaatttcaaattctcttgaattttcaa 101  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  36302473 atttgaattccttaaaatttcaaattctctaaaattttcaa 36302433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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