View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20425_low_3 (Length: 671)

Name: NF20425_low_3
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20425_low_3
NF20425_low_3
[»] chr6 (2 HSPs)
chr6 (17-408)||(6712937-6713329)
chr6 (509-647)||(6712702-6712838)
[»] chr2 (2 HSPs)
chr2 (515-642)||(15156824-15156952)
chr2 (607-647)||(42941590-42941630)
[»] chr3 (2 HSPs)
chr3 (528-642)||(44363697-44363811)
chr3 (605-647)||(35512151-35512193)
[»] chr8 (3 HSPs)
chr8 (519-588)||(32988599-32988668)
chr8 (530-585)||(32985887-32985942)
chr8 (537-585)||(32986741-32986789)
[»] chr5 (1 HSPs)
chr5 (528-590)||(7577418-7577480)
[»] scaffold0242 (1 HSPs)
scaffold0242 (525-642)||(18098-18214)
[»] chr7 (2 HSPs)
chr7 (530-585)||(32052141-32052196)
chr7 (333-375)||(6032865-6032907)
[»] chr4 (2 HSPs)
chr4 (607-641)||(4298758-4298792)
chr4 (519-642)||(26451248-26451371)
[»] chr1 (1 HSPs)
chr1 (607-655)||(45646569-45646617)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 6713329 - 6712937
Alignment:
Q  17 gaacaaattta-gataactaattgacatatttaattaattgaacagaatgctaaccacactttttaaatattggccataaattaatatgacactcaacaa 115  Q
    ||||||||||| ||||||||||||||||||| || |||||||||| |||| | |||||| |||| |||||||||||||||||||||||||||||||||||    
T  6713329 gaacaaatttatgataactaattgacatatt-aactaattgaacataatgtttaccaca-ttttaaaatattggccataaattaatatgacactcaacaa 6713232  T
Q  116 cagtttaaggtcaagtgtcacattttaacatcatgaacaacagatcatggtacaaacatggttcaagggagaatataggacagaaaaagttacactgctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6713231 cagtttaaggtcaagtgtcacattttaacatcatgaacaacagatcatggtacaaacatggttcaagggagaatataggacagaaaaagttacactgctg 6713132  T
Q  216 gaagaaaacacagaaaagaatatccttgaaagtccttaacaaacctagagagagtttatattggataataaatgcataa--aaaataaaacctaacatac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||    
T  6713131 gaagaaaacacagaaaagaatatccttgaaagtccttaacaaacctagagagagttcataatggataataaatgcataaaaaaaataaaacctaacatac 6713032  T
Q  314 taatgtagacgtggattggtgcattcctcccatgattttccaaagatttggagccctgaaaaattaccacttagatcactaaatatcatcaaaat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6713031 taatgtagacgtggattggtgcattcctcccatgattttccaaagatttggagccctgaaaaattaccacttagatcactaaatatcatcaaaat 6712937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 509 - 647
Target Start/End: Complemental strand, 6712838 - 6712702
Alignment:
Q  509 tttgtccctcaaaaaatttcatcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttgtattannnnnnngtggttgtgtt 608  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||  ||| |||||| ||||||| |||||||||||||       |||||  ||||    
T  6712838 tttgtccctcaaaaaaattcgtcacaacttttggtccgtgcatttaagaaaaaccatgtgtatccttcgaaattttgtattattttttggtggt--tgtt 6712741  T
Q  609 tagtacattatagaaatctcttttgcaaaagtttgattt 647  Q
    || ||| ||||||||||||||||||||||||||| ||||    
T  6712740 tattacgttatagaaatctcttttgcaaaagtttaattt 6712702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 515 - 642
Target Start/End: Complemental strand, 15156952 - 15156824
Alignment:
Q  515 cctcaaaaaatttc-atcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttgtattannnnnnngtggttgtgtttagta 613  Q
    ||||| |||||||| ||||||||||||||||| |  |||||||| |||||||||| ||| ||||||||||| |||||       ||||| ||||||||||    
T  15156952 cctcataaaatttctatcacaacttttggtccctacatttaagtaaaatcatgtgtatctttcaaaattttctattatttttttgtggtcgtgtttagta 15156853  T
Q  614 cattatagaaatctcttttgcaaaagttt 642  Q
    | ||||||||||||||   ||||||||||    
T  15156852 cgttatagaaatctctcaagcaaaagttt 15156824  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 607 - 647
Target Start/End: Complemental strand, 42941630 - 42941590
Alignment:
Q  607 tttagtacattatagaaatctcttttgcaaaagtttgattt 647  Q
    |||| |||||||||||||| |||||||||||||||| ||||    
T  42941630 tttaatacattatagaaatatcttttgcaaaagtttaattt 42941590  T

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Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 528 - 642
Target Start/End: Complemental strand, 44363811 - 44363697
Alignment:
Q  528 catcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttgtattannnnnnngtggttgtgtttagtacattatagaaatct 627  Q
    |||||||||||||||||| || || ||||| |||||||||| |||||||||| ||||||||||       || || ||||||||||| || ||||||| |    
T  44363811 catcacaacttttggtccttgcatctaagtaaaatcatgtgtatccttcaaatttttgtattatttttttgtagtcgtgtttagtacgttgtagaaattt 44363712  T
Q  628 cttttgcaaaagttt 642  Q
    || ||||||||||||    
T  44363711 ctcttgcaaaagttt 44363697  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 647
Target Start/End: Original strand, 35512151 - 35512193
Alignment:
Q  605 tgtttagtacattatagaaatctcttttgcaaaagtttgattt 647  Q
    |||||||||||||||| |||||| | |||||||||||||||||    
T  35512151 tgtttagtacattatataaatctatcttgcaaaagtttgattt 35512193  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 32988599 - 32988668
Alignment:
Q  519 aaaaaatttcatcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttgtat 588  Q
    |||||| ||| |||||| ||||||||| |||||||||||  |||||||||||||| || |||||||||||    
T  32988599 aaaaaaattcgtcacaatttttggtccatgtatttaagtataatcatgtgcatccatcgaaattttgtat 32988668  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 585
Target Start/End: Original strand, 32985887 - 32985942
Alignment:
Q  530 tcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttg 585  Q
    |||||| ||||||||| |||||||||||  ||||||||| ||||||| ||||||||    
T  32985887 tcacaatttttggtccttgtatttaagtataatcatgtgtatccttcgaaattttg 32985942  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 585
Target Start/End: Original strand, 32986741 - 32986789
Alignment:
Q  537 ttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttg 585  Q
    ||||||||| | |||||||||  ||||||||| ||||||||||||||||    
T  32986741 ttttggtccctttatttaagtataatcatgtgtatccttcaaaattttg 32986789  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 590
Target Start/End: Complemental strand, 7577480 - 7577418
Alignment:
Q  528 catcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttgtatta 590  Q
    ||||| || ||||||||| || |||||||| |||||||||| |||||| ||||||||||||||    
T  7577480 catcataatttttggtccctgcatttaagtaaaatcatgtgtatcctttaaaattttgtatta 7577418  T

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Target: scaffold0242 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 642
Target Start/End: Original strand, 18098 - 18214
Alignment:
Q  525 tttcatcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttgtattannnnnnngtggttgtgtttagtacattatagaaa 624  Q
    |||| ||||||||||||||   |  |||||||| |||| ||||| |||||||  ||||||||||||       ||||||||||||| ||| |||||||||    
T  18098 tttcgtcacaacttttggttactacatttaagtaaaataatgtgtatccttcggaattttgtattatttttt-gtggttgtgtttaatacgttatagaaa 18196  T
Q  625 tctcttttgcaaaagttt 642  Q
    | ||| ||||||||||||    
T  18197 tatctcttgcaaaagttt 18214  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 585
Target Start/End: Complemental strand, 32052196 - 32052141
Alignment:
Q  530 tcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttg 585  Q
    |||||||||||| | | || |||||||| || ||||||||||||||||||||||||    
T  32052196 tcacaacttttgattcatgcatttaagtaaattcatgtgcatccttcaaaattttg 32052141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 6032907 - 6032865
Alignment:
Q  333 tgcattcctcccatgattttccaaagatttggagccctgaaaa 375  Q
    |||| |||||||||||||||||||||||||| |||||| ||||    
T  6032907 tgcaatcctcccatgattttccaaagatttgaagccctaaaaa 6032865  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 607 - 641
Target Start/End: Complemental strand, 4298792 - 4298758
Alignment:
Q  607 tttagtacattatagaaatctcttttgcaaaagtt 641  Q
    ||||||||||||||||||||||| |||||||||||    
T  4298792 tttagtacattatagaaatctctcttgcaaaagtt 4298758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 642
Target Start/End: Complemental strand, 26451371 - 26451248
Alignment:
Q  519 aaaaaatttcatcacaacttttggtccgtgtatttaagttaaatcatgtgcatccttcaaaattttgtattannnnnnngtggttgtgtttagtacatta 618  Q
    |||||||||| |||||||||||| ||| |||| |||||| ||||||| |  ||| ||| ||| |||||||||       |||||  ||||||||||  ||    
T  26451371 aaaaaatttcttcacaacttttgatccctgtaattaagtaaaatcatatatatctttcgaaaatttgtattatttattcgtggtcttgtttagtacgcta 26451272  T
Q  619 tagaaatctcttttgcaaaagttt 642  Q
    ||||||| | | ||||||||||||    
T  26451271 tagaaatttttcttgcaaaagttt 26451248  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 607 - 655
Target Start/End: Complemental strand, 45646617 - 45646569
Alignment:
Q  607 tttagtacattatagaaatctcttttgcaaaagtttgatttgttttaac 655  Q
    ||||||||||||||||||||||  | |||||||||| |||| |||||||    
T  45646617 tttagtacattatagaaatctccctcgcaaaagtttaattttttttaac 45646569  T

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