View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20425_low_5 (Length: 629)
Name: NF20425_low_5
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 33163797 - 33164385
Alignment:
| Q |
1 |
ccatttctgttttctcctcgcctcatgccataataagataaatagacagactaatatctataatcgtatgaacaatcattnnnnnnnnnnnnnnncattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33163797 |
ccatttctgttttctcctcgcctcatgccataataagataaatagac----taatatctataatcgtatgaacaatcatttacatata-------cattg |
33163885 |
T |
|
| Q |
101 |
cacttgatatcttgatagtccaacaatacttgacaatgcatgttattaatgttgtatggtatgatgctattaagtttattcttctagatgagtcttaccc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33163886 |
cacttgatatcttgatagtctaacaatacttgacaatgcatgttattaatgttgtatggtattatgctattaagtttattcttctagatgagtcttaccc |
33163985 |
T |
|
| Q |
201 |
tttagtctttactacggttcatcaaagattaacctaagtgcgccgatatgatttatacttcatgacttaattaatatccttaatttttctagtgaattga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33163986 |
tttagtctttactacggttcatcaaagattaacctaagtgcgccgatatgatttatacttcatgacttaattaatatccttaatttttcttgtgaattga |
33164085 |
T |
|
| Q |
301 |
tattgctactttataaaatcaacttggatttcttgattttgctgaattacannnnnnnnctttcagttcgcaaggcttattatgaagcagtgaaaagagc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33164086 |
tattgctactttataaaatcaacttggattttttgattttgctaaattacattttttttctttcagttcgcaaggcttattctgaagcagtgaaaagagc |
33164185 |
T |
|
| Q |
401 |
tattttggatcatcatactgtatgatctattgattggattttgtgtcatcttctattagtgtttctgtaacttcattttgtctctttttaataattttac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33164186 |
tattttggatcatcatactgtatgatctattgattggattttgtgtcatcttctattagtgtttctgtaacttcattttgtctctttttaataattttac |
33164285 |
T |
|
| Q |
501 |
attagcttaactgattcaaatgtaattatagcctcatttgggcttttgttccactgcaggcagtggcagacggtcacttgttaaaacttcctttcagcac |
600 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
33164286 |
attagcttagctgattcaaatgtaattatagcttcatttgggcttttgttccactgcaggcagtggcaggcggtcatttgttaaaacttcctttcagcac |
33164385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 361 - 601
Target Start/End: Complemental strand, 46161764 - 46161514
Alignment:
| Q |
361 |
tttcagttcgcaaggcttattatgaagcagtgaaaagagctattttggatcatcatactgtatgatctattgattggattttgtg----------tcatc |
450 |
Q |
| |
|
|||||||||| |||| ||||| | |||||||||| || ||||| |||||||||||| |||||||| | | ||||| |||||||| | ||| |
|
|
| T |
46161764 |
tttcagttcggaaggattattctaaagcagtgaagagtgctatcgtggatcatcatattgtatgatttgtagattgaattttgtgctttacacatttatc |
46161665 |
T |
|
| Q |
451 |
ttctattagtgtttctgtaacttcattttgtctctttttaataattttacattagcttaa-ctgattcaaatgtaattatagcctcatttgggcttttgt |
549 |
Q |
| |
|
|||| || ||||| | ||| || |||||||||| |||| |||||| ||||||||||| | || |||||||||| |||||||||||||| || ||| | |
|
|
| T |
46161664 |
ttcttttt-tgtttatctaattttattttgtctcctttttataattgtacattagctttagcttattcaaatgttattatagcctcattgtggttttcat |
46161566 |
T |
|
| Q |
550 |
tccactgcaggcagtggcagacggtcacttgttaaaacttcctttcagcact |
601 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46161565 |
tccactgcaggcagtagcaggcggtcacttgttaaaacttcctttcagcact |
46161514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 46162112 - 46162037
Alignment:
| Q |
96 |
cattgcacttgatatcttgatagtccaacaatacttgacaatgcatgttattaatgttgtatggtatgatgctattaagt |
175 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
46162112 |
cattgcacttgatatcttgatag----ataatatttgtcaatgcatgttattcatgttgtatggtatgatgatattaagt |
46162037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University