View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20425_low_6 (Length: 557)

Name: NF20425_low_6
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20425_low_6
NF20425_low_6
[»] chr7 (5 HSPs)
chr7 (14-231)||(34995321-34995540)
chr7 (267-349)||(34995546-34995628)
chr7 (314-370)||(34994917-34994973)
chr7 (330-370)||(4181037-4181077)
chr7 (308-370)||(11698124-11698186)
[»] chr5 (6 HSPs)
chr5 (310-370)||(14394683-14394743)
chr5 (308-370)||(34064852-34064914)
chr5 (330-370)||(36423201-36423241)
chr5 (276-370)||(40705538-40705632)
chr5 (309-365)||(10143127-10143183)
chr5 (330-366)||(31569583-31569619)
[»] chr8 (3 HSPs)
chr8 (275-370)||(30959263-30959358)
chr8 (308-383)||(8826431-8826506)
chr8 (330-370)||(1283361-1283401)
[»] chr4 (6 HSPs)
chr4 (333-370)||(50464305-50464342)
chr4 (308-370)||(56459725-56459787)
chr4 (361-390)||(29099425-29099454)
chr4 (309-366)||(35318331-35318388)
chr4 (309-370)||(52305839-52305900)
chr4 (328-368)||(31907682-31907722)
[»] chr1 (1 HSPs)
chr1 (308-370)||(19402356-19402418)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 34995321 - 34995540
Alignment:
Q  14 gaacaagagaggtgaggcggcgagatcagatctatttcacgttattcgtcctcttttgttttagttttattttgttacaaatgaagagatcccgttcacg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||     
T  34995321 gaacaagagaggtgaggcggcgagatcagatctatttcacgttcttggtcctcttttgttttagttttattttgttacagatgaacagatcccgttcaca 34995420  T
Q  114 tttcacatttttcatgaaaattgctttaaaataacaaaacacactaaaggcataactagataaattggtagatggca--gattgattcttctacatacaa 211  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||  |||  || || |  |   |    ||||| ||  |||||||||||||||||||||    
T  34995421 tttcacattattcatgaaaattgctttaaaataacaaaacaaacacaagtgatgacaatctttttattcagatgacatagattgattcttctacatacaa 34995520  T
Q  212 gtgatgaagatgaaaagata 231  Q
    ||||||||||||||||||||    
T  34995521 gtgatgaagatgaaaagata 34995540  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 34995546 - 34995628
Alignment:
Q  267 gttagataaaaataatacaataagggaatgcacatggtttgttttttaatcttgaccatctaattttaatctaatgattgata 349  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34995546 gttagataaaaataatacaataagggaatacacatggtttgttttttaatcttgaccatctaattttaatctaatgattgata 34995628  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 34994973 - 34994917
Alignment:
Q  314 aatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  34994973 aatcttgaccatctaattttaatctaatgattgctagttattctcaccattctcata 34994917  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 4181037 - 4181077
Alignment:
Q  330 ttttaatctaatgattgataattattctcaccattctcata 370  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  4181037 ttttaatcaaatggttgataattattctcaccattctcata 4181077  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 11698124 - 11698186
Alignment:
Q  308 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    |||||||||||  ||||| || |||| |||||||||||||| || ||||||| ||||||||||    
T  11698124 ttttttaatctcaaccatttatttttgatctaatgattgatgatcattctcaacattctcata 11698186  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 14394743 - 14394683
Alignment:
Q  310 ttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  14394743 ttttaatctcaaccatctattttttatctaatgattgataattattatcaccattctcata 14394683  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 34064852 - 34064914
Alignment:
Q  308 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    ||||||||||| |||||| || ||||||||||| | ||||||| | |||||||||||||||||    
T  34064852 ttttttaatctagaccatttatttttaatctaaaggttgataagtgttctcaccattctcata 34064914  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 36423241 - 36423201
Alignment:
Q  330 ttttaatctaatgattgataattattctcaccattctcata 370  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  36423241 ttttaatctgatgattgataattattctcatcattctcata 36423201  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 40705632 - 40705538
Alignment:
Q  276 aaataatacaataagggaatgcacatggtttgttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    ||||||||  ||||||| |||| ||||  |||||||||||||    ||||||||  ||||||||| | || |||| |||||||||||||||||||    
T  40705632 aaataataggataaggggatgcccatgtattgttttttaatcacagccatctaaaattaatctaagggttaataactattctcaccattctcata 40705538  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 10143127 - 10143183
Alignment:
Q  309 tttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattc 365  Q
    ||||||||||  |||||||| ||||||||||||  ||||||||||||| || |||||    
T  10143127 tttttaatctcaaccatctatttttaatctaatagttgataattattcccatcattc 10143183  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 31569583 - 31569619
Alignment:
Q  330 ttttaatctaatgattgataattattctcaccattct 366  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  31569583 ttttaatctaatgattgataattattttcatcattct 31569619  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 370
Target Start/End: Original strand, 30959263 - 30959358
Alignment:
Q  275 aaaataatacaataagggaatgcacatggtttgttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    |||||||||||||||| | |||||||||  |||||||||||||   ||||| |||  ||||||||| |  ||||||||||||||| ||||||||||    
T  30959263 aaaataatacaataagaggatgcacatgtgttgttttttaatcacaaccatttaaagttaatctaaagggtgataattattctcatcattctcata 30959358  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 8826431 - 8826506
Alignment:
Q  308 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcataagatatgtcctct 383  Q
    ||||| |||||  |||||||| || |||| ||||| ||||||| ||||||||||||||||||| ||||| ||||||    
T  8826431 tttttaaatctcaaccatctatttgtaatttaatggttgataactattctcaccattctcatatgatatttcctct 8826506  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 1283401 - 1283361
Alignment:
Q  330 ttttaatctaatgattgataattattctcaccattctcata 370  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  1283401 tttttatctaatgattgataattattctcatcattctcata 1283361  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 50464305 - 50464342
Alignment:
Q  333 taatctaatgattgataattattctcaccattctcata 370  Q
    |||||||||| |||||||||||||||||||||||||||    
T  50464305 taatctaatggttgataattattctcaccattctcata 50464342  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 56459725 - 56459787
Alignment:
Q  308 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    |||| |||||| |||||| || ||||||||||| | ||||||| | |||||||||||||||||    
T  56459725 ttttgtaatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcata 56459787  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 390
Target Start/End: Complemental strand, 29099454 - 29099425
Alignment:
Q  361 cattctcataagatatgtcctctatatata 390  Q
    ||||||||||||||||||||||||||||||    
T  29099454 cattctcataagatatgtcctctatatata 29099425  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 35318331 - 35318388
Alignment:
Q  309 tttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattct 366  Q
    ||||||||||  ||||| || ||||||||||||| ||||| || ||||||||||||||    
T  35318331 tttttaatctcaaccatttatttttaatctaatggttgatgatcattctcaccattct 35318388  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 52305900 - 52305839
Alignment:
Q  309 tttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    ||||||||||  ||||| || ||||||||||||| ||||| || ||||||| ||||||||||    
T  52305900 tttttaatctcaaccatttatttttaatctaatggttgatgatcattctcatcattctcata 52305839  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 31907682 - 31907722
Alignment:
Q  328 aattttaatctaatgattgataattattctcaccattctca 368  Q
    ||||||||||||| | |||||||| ||||||||||||||||    
T  31907682 aattttaatctaagggttgataatcattctcaccattctca 31907722  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 19402418 - 19402356
Alignment:
Q  308 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 370  Q
    |||| |||||| |||||| || ||||||||||| | ||||||| | |||||||||||||||||    
T  19402418 ttttgtaatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcata 19402356  T

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