View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_low_7 (Length: 507)
Name: NF20425_low_7
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Complemental strand, 29293402 - 29292909
Alignment:
| Q |
15 |
agtatttcttctaattcctatttaaatttcaaacttgcaagttgcttcaaccttacaggtgttattttaacatgccaactactttgttgaggtatacaca |
114 |
Q |
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| T |
29293402 |
agtatttcttctaattcctatttaaatttcaaacttgcaagttgcttcaaccttacaggtgttattttaacatgccaactactttgttgaggtatacaca |
29293303 |
T |
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| Q |
115 |
acacacatcttgtttcttcaaagtaattgaattattgtttgcaatcgttactttgactacaatattaagattttagaaatctttgaatgtctaatgtgat |
214 |
Q |
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| T |
29293302 |
acacacatcttgtttcttcaaagtaattgaattattgtttgcaatcgttactttgactacaatattaagattttagaaatctttgaatgtctaatgtgat |
29293203 |
T |
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| Q |
215 |
cccatctgcgacttaccagtcacatttatccaaagatgtatataatttcaagaaaggttgtatgattgcaacaaccatttttcccatgcctttcataaca |
314 |
Q |
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| T |
29293202 |
cccatctgcaacttaccagtcacatttatccaaagatgtatataatttcaagaaaggttatatgattgcaacaacaatttataccatgactttcataaca |
29293103 |
T |
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| Q |
315 |
aaaatttgagccatataaggcatcagtagtagaaatataaaaaattcaaatttcaggatctgagaagcaatataaaattggtgtcaattcaaataaaatt |
414 |
Q |
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| T |
29293102 |
aaaatttgagccatataaggcatcagtagtagaaatataaaaaattcaaatttcaggatctgagaagcaatataaaattggtgtcaattcaaataaaatt |
29293003 |
T |
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| Q |
415 |
tgatttgaggagaaacaagatttgactgaaaatagataaggaaaaatgaattctgcttgg-atttgacaatttaaaatgggtaaagttcttctc |
507 |
Q |
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| T |
29293002 |
tgatttgaggagaaacaagatttgactgaaaatagataaggaaaaatgaattctgcttggaatttgacaatttaaaatgggtaaagttcttctc |
29292909 |
T |
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