View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_low_8 (Length: 457)
Name: NF20425_low_8
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_8 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 441
Target Start/End: Complemental strand, 25813188 - 25812756
Alignment:
| Q |
12 |
atgaattgaagtatttgacaatattgaaatgtctaaattatgtagtacatgcagataaattcggtatttgatttgatgagagtgtcttcaaacgtcgcaa |
111 |
Q |
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| T |
25813188 |
atgaattgaagtatttgacaatattgaaatgtctaaattatgtggtacatacagataaattcgatatttgatttgatgagaatgttttcaaacgtcgcaa |
25813089 |
T |
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| Q |
112 |
agtatnnnnnnnn-ctctgaa-gatacttagagaatcacatgcacttaacctccctatatgattaaagtcttgtaagttgaaacagagnnnnnnnn-ggg |
208 |
Q |
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| T |
25813088 |
agaataaaaaaaaactctgaaagatacatagagaatcacatgcacttaacgtccctatatgattaaagtcttgtaagttgaaacagagaaaaaaaaaggg |
25812989 |
T |
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| Q |
209 |
aataaattccatccatttcaaaattagtagttatgtatttgtatcttctaatctttaagtccatttggttctagaaataaaccctaccttgatttaaggt |
308 |
Q |
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| T |
25812988 |
aataaattccatccaattcaaaattagtagttctgtatttgtatcttctaatctttaagtccatttggttctagaaataaaccctaccttgatttaaggt |
25812889 |
T |
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| Q |
309 |
ctttatacatttgtatattcaccaacaaagaatatgccaatgactcatgatgaagttagaagaattgattcttcatttttggatagatattagatactat |
408 |
Q |
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| T |
25812888 |
ctttatacatttgtatattcaccaacaaagaatatgccaatgactcatgatgaagtcagaagaattgattcttcaattttggatagatattagatactat |
25812789 |
T |
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| Q |
409 |
actctataatatttatagtacatgacaagttgg |
441 |
Q |
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| T |
25812788 |
actctataatatttatagtacatgacaagttgg |
25812756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 442
Target Start/End: Complemental strand, 25800122 - 25799937
Alignment:
| Q |
253 |
cttctaatctttaagtccatttggttctagaaataaaccctaccttgatttaaggtctttatacatttgtatattcaccaacaaagaatatgccaatgac |
352 |
Q |
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| T |
25800122 |
cttctaatcttgaagtccatttgattctttgaagaaattctacctcgatttaaggtcca-attcatttgtatcttcaccagcaatga------caatgac |
25800030 |
T |
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| Q |
353 |
tcatgatgaagttagaagaattgattcttcatttttggatagatattagatactatactctataatatttat---agtacatgacaagttggt |
442 |
Q |
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| T |
25800029 |
ccatgatgaagtttgaagaactgattcttcatttttggatagatattagatactatactcttaaatatttatagtagtacatgacaagttggt |
25799937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 442
Target Start/End: Original strand, 114548 - 114733
Alignment:
| Q |
253 |
cttctaatctttaagtccatttggttctagaaataaaccctaccttgatttaaggtctttatacatttgtatattcaccaacaaagaatatgccaatgac |
352 |
Q |
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| T |
114548 |
cttctaatcttgaagtccatttgattctttgaagaaattctacctcgatttaaggtcca-attcatttgtatcttcaccagcaatga------caatgac |
114640 |
T |
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| Q |
353 |
tcatgatgaagttagaagaattgattcttcatttttggatagatattagatactatactctataatattta---tagtacatgacaagttggt |
442 |
Q |
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| T |
114641 |
ccatgatgaagtttgaagaactgattcttcatttttggatagatattagatactatactcttaaatatttatagtagtacatgacaagttggt |
114733 |
T |
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