View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20426_high_12 (Length: 250)

Name: NF20426_high_12
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20426_high_12
NF20426_high_12
[»] chr7 (21 HSPs)
chr7 (1-126)||(10335046-10335171)
chr7 (135-243)||(34828152-34828260)
chr7 (140-243)||(36346565-36346668)
chr7 (140-243)||(45782660-45782764)
chr7 (140-243)||(28307495-28307599)
chr7 (140-243)||(26972203-26972307)
chr7 (140-243)||(31148377-31148480)
chr7 (140-243)||(7699883-7699987)
chr7 (140-243)||(7700081-7700185)
chr7 (140-243)||(7700279-7700383)
chr7 (140-243)||(7700477-7700581)
chr7 (140-243)||(34108513-34108617)
chr7 (140-221)||(13108256-13108337)
chr7 (140-243)||(5811164-5811267)
chr7 (140-243)||(23980218-23980321)
chr7 (140-243)||(36957516-36957618)
chr7 (141-243)||(21807324-21807426)
chr7 (140-229)||(42220964-42221053)
chr7 (140-243)||(46475111-46475215)
chr7 (141-243)||(30887787-30887890)
chr7 (140-214)||(42950037-42950111)
[»] chr8 (10 HSPs)
chr8 (140-243)||(18184640-18184743)
chr8 (140-229)||(12665446-12665536)
chr8 (140-243)||(10203751-10203855)
chr8 (140-243)||(42162685-42162789)
chr8 (140-243)||(30432426-30432529)
chr8 (140-242)||(43186115-43186217)
chr8 (140-243)||(36189303-36189405)
chr8 (140-243)||(31318892-31318996)
chr8 (147-243)||(44081867-44081964)
chr8 (140-243)||(33726098-33726202)
[»] chr3 (16 HSPs)
chr3 (135-238)||(29472901-29473004)
chr3 (140-243)||(48200772-48200876)
chr3 (140-243)||(51339784-51339887)
chr3 (140-243)||(46111944-46112048)
chr3 (140-243)||(21559648-21559752)
chr3 (140-243)||(34749898-34750002)
chr3 (141-243)||(36749493-36749596)
chr3 (135-243)||(44000076-44000185)
chr3 (140-243)||(36370338-36370442)
chr3 (140-229)||(30735496-30735586)
chr3 (139-243)||(22894767-22894871)
chr3 (140-243)||(39072279-39072377)
chr3 (140-219)||(38231403-38231483)
chr3 (140-184)||(50966265-50966309)
chr3 (140-184)||(51069400-51069444)
chr3 (135-243)||(39467097-39467205)
[»] chr2 (9 HSPs)
chr2 (140-243)||(44958200-44958304)
chr2 (140-243)||(33732656-33732759)
chr2 (140-226)||(16089925-16090011)
chr2 (130-229)||(37498853-37498953)
chr2 (142-243)||(3830900-3831001)
chr2 (140-243)||(6376239-6376342)
chr2 (161-243)||(14573082-14573165)
chr2 (140-240)||(41188859-41188960)
chr2 (140-221)||(36315670-36315752)
[»] chr4 (8 HSPs)
chr4 (140-243)||(21390956-21391059)
chr4 (140-243)||(44275793-44275896)
chr4 (134-243)||(6112717-6112826)
chr4 (140-229)||(49243916-49244005)
chr4 (140-243)||(7217852-7217956)
chr4 (140-243)||(28093096-28093200)
chr4 (141-229)||(35545013-35545102)
chr4 (140-243)||(3672361-3672465)
[»] chr5 (11 HSPs)
chr5 (140-242)||(31800646-31800748)
chr5 (140-243)||(42683686-42683790)
chr5 (140-243)||(39371014-39371118)
chr5 (178-243)||(1815655-1815720)
chr5 (140-243)||(2237363-2237467)
chr5 (140-243)||(40887942-40888046)
chr5 (140-242)||(13347216-13347319)
chr5 (142-221)||(27553376-27553455)
chr5 (140-243)||(14831631-14831735)
chr5 (140-226)||(4300544-4300630)
chr5 (194-243)||(9408094-9408143)
[»] chr1 (7 HSPs)
chr1 (140-240)||(34307138-34307239)
chr1 (140-243)||(46901735-46901839)
chr1 (141-243)||(39249864-39249967)
chr1 (140-243)||(2509111-2509215)
chr1 (141-243)||(19258674-19258776)
chr1 (140-242)||(28647441-28647543)
chr1 (140-229)||(9642867-9642955)
[»] chr6 (6 HSPs)
chr6 (135-243)||(3986901-3987009)
chr6 (140-222)||(3118047-3118130)
chr6 (140-243)||(13697655-13697758)
chr6 (140-243)||(24208531-24208634)
chr6 (140-242)||(15345660-15345762)
chr6 (138-243)||(14023021-14023126)
[»] scaffold0043 (1 HSPs)
scaffold0043 (140-216)||(87163-87239)
[»] scaffold0062 (1 HSPs)
scaffold0062 (140-243)||(6805-6909)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 10335171 - 10335046
Alignment:
Q  1 acaaagtctaataatgcactgtcactatgatgggaatggcatggccttttttgagttgactctcacatggtctttaaatatgaattgtgaagtttatcga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10335171 acaaactctaataatgcactgtcactatgatgggaatggcatggccttttttgagttgactctcacatggtctttaaatatgaattgtgaagtttatcga 10335072  T
Q  101 taggtagatgtgtcgggcatttaatt 126  Q
    |||||||||||||||| |||||||||    
T  10335071 taggtagatgtgtcggacatttaatt 10335046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 34828260 - 34828152
Alignment:
Q  135 aataagaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccat 234  Q
    |||| |||||||||||||||||||||||||||||||| |  ||||| ||| || || ||||||||||||| ||||||||||||||||||||||||||  |    
T  34828260 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcact 34828161  T
Q  235 tttcatctc 243  Q
    |||||||||    
T  34828160 tttcatctc 34828152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 36346565 - 36346668
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| ||||||||||||| || ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| || |||||    
T  36346565 gaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-cctttttc 36346663  T
Q  239 atctc 243  Q
    |||||    
T  36346664 atctc 36346668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 45782660 - 45782764
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacag-cctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| ||||||| |||||  |||||||||||  || |||||||||||||||| |||||||||||||||||||||||| || |||||    
T  45782660 gaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttc 45782759  T
Q  239 atctc 243  Q
    |||||    
T  45782760 atctc 45782764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 28307495 - 28307599
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||||| ||||||||||| || ||||||||| ||  || ||||| ||||||| |||||||||||||||||||||||| || |||||    
T  28307495 gaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttttc 28307594  T
Q  239 atctc 243  Q
    |||||    
T  28307595 atctc 28307599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 26972203 - 26972307
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| |||||||||||||  | ||||||||| ||  |||| |||||||||||  ||||||||||||||||||||||| || |||||    
T  26972203 gaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttc 26972302  T
Q  239 atctc 243  Q
    |||||    
T  26972303 atctc 26972307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 31148480 - 31148377
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    ||||||||||||||||||  |||||||||||| || ||||  ||| || || |||||||  |||| |||||||||||||||||||||||| |||||||||    
T  31148480 gaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttca 31148381  T
Q  240 tctc 243  Q
    ||||    
T  31148380 tctc 31148377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 7699883 - 7699987
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||| ||| ||||||||||||| || |||| |||| | | |||||||| ||||||| ||||||||||| ||||||||||||||| ||||     
T  7699883 gaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttt 7699982  T
Q  239 atctc 243  Q
    |||||    
T  7699983 atctc 7699987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 7700081 - 7700185
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||| ||| ||||||||||||| || |||| |||| | | |||||||| ||||||| ||||||||||| ||||||||||||||| ||||     
T  7700081 gaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttt 7700180  T
Q  239 atctc 243  Q
    |||||    
T  7700181 atctc 7700185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 7700279 - 7700383
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||| ||| ||||||||||||| || |||| |||| | | |||||||| ||||||| ||||||||||| ||||||||||||||| ||||     
T  7700279 gaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttt 7700378  T
Q  239 atctc 243  Q
    |||||    
T  7700379 atctc 7700383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 7700477 - 7700581
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||| ||| ||||||||||||| || |||| |||| | | |||||||| ||||||| ||||||||||| ||||||||||||||| ||||     
T  7700477 gaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttt 7700576  T
Q  239 atctc 243  Q
    |||||    
T  7700577 atctc 7700581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 34108617 - 34108513
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacag-cctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||| ||| |||||||||||||  | |||||||||  || |||| |||||||||||  ||||||||||||||||||||||| || |||||    
T  34108617 gaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttc 34108518  T
Q  239 atctc 243  Q
    |||||    
T  34108517 atctc 34108513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 13108337 - 13108256
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatca 221  Q
    |||||||||||||||||| ||||||| ||||| |||| ||||||| |  |||||||||||||||| ||||||||| ||||||    
T  13108337 gaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatca 13108256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 5811164 - 5811267
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||| ||||||| ||||| ||   ||||||| |  |||||||||||||||| ||||||||| |||||| ||| ||| || ||||||    
T  5811164 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttca 5811263  T
Q  240 tctc 243  Q
    ||||    
T  5811264 tctc 5811267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 23980321 - 23980218
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||||||||||| |||||| ||  ||||||| |  || |||||| |||||| ||||||||| |||||| ||| ||| || ||||||    
T  23980321 gaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttttca 23980222  T
Q  240 tctc 243  Q
    ||||    
T  23980221 tctc 23980218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 36957618 - 36957516
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    ||||||||||||||||||   ||||| ||||| |||| || |||| || ||||||| |||||||| |||||||||||||| | || ||||||||||||||    
T  36957618 gaaaaagataggtagacacaattttttatacacctttcatatacaccc-atgtgttgggggtattttagtaattttacattacattatcatccattttca 36957520  T
Q  240 tctc 243  Q
    ||||    
T  36957519 tctc 36957516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 21807324 - 21807426
Alignment:
Q  141 aaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttcat 240  Q
    |||||||||||| |||| ||||||| |||||  | | || |||| || | |||||||||||||| ||||||||| |||| | ||||||||||||||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcat 21807423  T
Q  241 ctc 243  Q
    |||    
T  21807424 ctc 21807426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 42220964 - 42221053
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggta-ttgtagtaattttacatcatatcatca 229  Q
    |||||||||||||||||| ||||||||||||| |  |||||||||  | |||||||||||||| || ||||||||| ||||||||||||||    
T  42220964 gaaaaagataggtagaca-cctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatca 42221053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 46475215 - 46475111
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgtta-ggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| ||||||| ||||| || | ||||||| |  |||||||| |||||||| ||||||||| |||||| ||| ||| || |||||    
T  46475215 gaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcaccccttttc 46475116  T
Q  239 atctc 243  Q
    |||||    
T  46475115 atctc 46475111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 30887890 - 30887787
Alignment:
Q  141 aaaaagataggta-gacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    ||||||||| ||| |||| |||||||||||||  | |||| |||| || |||| |||| ||||||  ||||||||||||||||||||||| || ||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttca 30887791  T
Q  240 tctc 243  Q
    ||||    
T  30887790 tctc 30887787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 42950037 - 42950111
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattt 214  Q
    |||||||||||||||||| ||||||| ||||| ||   ||||||| || |||| | ||||||||| |||||||||    
T  42950037 gaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 18184743 - 18184640
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| ||||||||||| |||||||||||| || ||||||    
T  18184743 gaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttca 18184644  T
Q  240 tctc 243  Q
    ||||    
T  18184643 tctc 18184640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 12665536 - 12665446
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatca 229  Q
    ||||||||||||||||||||||||||| |||| || ||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||    
T  12665536 gaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatca 12665446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 10203855 - 10203751
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| ||| |||| |||||| |||| ||||||||||| ||||||||| || || |||||    
T  10203855 gaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctttttc 10203756  T
Q  239 atctc 243  Q
    |||||    
T  10203755 atctc 10203751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 42162789 - 42162685
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    ||||||||||||||||||  ||||||||||||  ||||||||||| ||  |||| |||||||||||  ||||||||||||||||||||||| || |||||    
T  42162789 gaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttc 42162690  T
Q  239 atctc 243  Q
    |||||    
T  42162689 atctc 42162685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 30432529 - 30432426
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    ||||||||| | |||||| ||||||||||||| || ||||||||| || || | ||| ||||||| |||||||||||||||||||||||| || ||||||    
T  30432529 gaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttca 30432430  T
Q  240 tctc 243  Q
    ||||    
T  30432429 tctc 30432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 43186217 - 43186115
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||||| |||||||||||  | ||||||||| ||||||| ||||||| |||  |||||||||| |||||||||||| |  ||||||    
T  43186217 gaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttca 43186118  T
Q  240 tct 242  Q
    |||    
T  43186117 tct 43186115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 36189405 - 36189303
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||| ||||||||||||| |  ||||||||| || || ||||||||||||| || |||||||| ||||||||||||  | ||||||    
T  36189405 gaaaaagataggtagacaccctttttcatacaccacttatgtaca-cccatatgttaggggtattttaataattttatatcatatcatcactccttttca 36189307  T
Q  240 tctc 243  Q
    ||||    
T  36189306 tctc 36189303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 31318996 - 31318892
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||||| |||||||||||  | |||| |||| ||  |||| ||||| |||||  ||||||||||||||||||||||| || |||||    
T  31318996 gaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcaccctttttc 31318897  T
Q  239 atctc 243  Q
    |||||    
T  31318896 atctc 31318892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 44081964 - 44081867
Alignment:
Q  147 ataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttcatctc 243  Q
    ||||||||||| |||||||||||||  | ||||||||| ||  |||| |||||||||||  ||||||||||||| ||||||||| || ||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctc 44081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 33726202 - 33726098
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatcca-ttttc 238  Q
    |||||||||||||||||| ||||||| ||||| ||   |||||||    |||||||||||||||| ||||||||| |||||| ||| ||||||| |||||    
T  33726202 gaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccacttttc 33726103  T
Q  239 atctc 243  Q
    |||||    
T  33726102 atctc 33726098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 29473004 - 29472901
Alignment:
Q  135 aataagaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccat 234  Q
    |||| |||||||||||||||||||||||||||||||| |  ||||| ||| || |||||||||||||||| ||||||||||||||||||||||||||| |    
T  29473004 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatccct 29472905  T
Q  235 tttc 238  Q
    ||||    
T  29472904 tttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 48200876 - 48200772
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtaca-gcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    ||||||||||||||||||||||||||||||||  |||||||||||  || |||| ||| |||||||  |||||||||||||||||||||||||| |||||    
T  48200876 gaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttttc 48200777  T
Q  239 atctc 243  Q
    |||||    
T  48200776 atctc 48200772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 51339784 - 51339887
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||| ||||||||||||| || |||||||||    ||||||||| |||||| |||||||||||||||||||||||| || ||||||    
T  51339784 gaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttca 51339883  T
Q  240 tctc 243  Q
    ||||    
T  51339884 tctc 51339887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 46111944 - 46112048
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| | ||||||||||| ||||||| |||| ||  |||| ||||||||||| |||||||||||||||||||||||| || |||||    
T  46111944 gaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcaccctttttc 46112043  T
Q  239 atctc 243  Q
    |||||    
T  46112044 atctc 46112048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 21559752 - 21559648
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    ||||||||||| |||||| | ||||||||||| || ||||||||| ||  |||||||||||||||| |||||||||||||||||||||| | || |||||    
T  21559752 gaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattaccctttttc 21559653  T
Q  239 atctc 243  Q
    |||||    
T  21559652 atctc 21559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 34749898 - 34750002
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcc-tatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||  |||||||||||||||||||  | ||||||||| || ||||| |||||||||||  ||||||||||||||||||||||| || |||||    
T  34749898 gaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttttc 34749997  T
Q  239 atctc 243  Q
    |||||    
T  34749998 atctc 34750002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 36749596 - 36749493
Alignment:
Q  141 aaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||  ||||||||||||  ||||||||||| ||| |||| |||| ||||||  ||||||||||||||||||||||| || ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  240 tctc 243  Q
    ||||    
T  36749496 tctc 36749493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 44000185 - 44000076
Alignment:
Q  135 aataagaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatcca 233  Q
    |||| ||||||||||||||||||  ||||||||||||  ||||||||||  ||| |||| |||| ||||||  ||||||||||||||||||||||| ||     
T  44000185 aataggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccct 44000086  T
Q  234 ttttcatctc 243  Q
    ||||||||||    
T  44000085 ttttcatctc 44000076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 36370338 - 36370442
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||| |  ||||||||||||  |||||| |||| ||| |||| |||||||||||  ||||||||||||||||||||||| || |||||    
T  36370338 gaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttc 36370437  T
Q  239 atctc 243  Q
    |||||    
T  36370438 atctc 36370442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 30735496 - 30735586
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggta-ttgtagtaattttacatcatatcatca 229  Q
    |||||||||||||||||| ||||||||||||| |  |||||||||  | |||||||||||||| || ||||||||| ||||||||||||||    
T  30735496 gaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatca 30735586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 22894871 - 22894767
Alignment:
Q  139 agaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccatttt 237  Q
    |||||||||||| |||||| |||||| ||||||  | ||||||||| ||| |||| |||||||||||  ||||||| |||||||||||||||||| ||||    
T  22894871 agaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 22894773  T
Q  238 catctc 243  Q
    ||||||    
T  22894772 catctc 22894767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 39072279 - 39072377
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    ||||||||||||||||||  |||||| |||||||||| ||||||| || |||||| | ||||||| |||||     |||||| ||||||| |||||||||    
T  39072279 gaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagta-----acatcacatcatcacccattttca 39072373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 38231483 - 38231403
Alignment:
Q  140 gaaaaagataggtagacatcct-ttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacat 219  Q
    |||||||||||||||||||||| |||| ||||| || ||||||||| || |||||| ||||||| | |||| |||| ||||    
T  38231483 gaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacat 38231403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 50966309 - 50966265
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtaca 184  Q
    ||||||||||||||||||| |||||||||||| || |||||||||    
T  50966309 gaaaaagataggtagacattctttttcatacacctcttatgtaca 50966265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 51069444 - 51069400
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtaca 184  Q
    ||||||||||||||||||| |||||||||||| || |||||||||    
T  51069444 gaaaaagataggtagacattctttttcatacacctcttatgtaca 51069400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 39467097 - 39467205
Alignment:
Q  135 aataagaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccat 234  Q
    |||| |||||||||||||| ||| ||||||| ||||| ||   ||||||| |  |||||||| || |||| ||||||||| | |||| ||| ||| || |    
T  39467097 aataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccct 39467196  T
Q  235 tttcatctc 243  Q
    |||||||||    
T  39467197 tttcatctc 39467205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 44958304 - 44958200
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||||||||||||||||| || ||||||| | ||| |||||||||||||||| |||||||||||||||||||||||| || ||||     
T  44958304 gaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcaccctttttt 44958205  T
Q  239 atctc 243  Q
    |||||    
T  44958204 atctc 44958200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 33732759 - 33732656
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||| ||||||||||||| || ||||||||| || || | ||||||||||| ||||||||||||||||||||| || || ||||||    
T  33732759 gaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttca 33732660  T
Q  240 tctc 243  Q
    ||||    
T  33732659 tctc 33732656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 16090011 - 16089925
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatca 226  Q
    |||||||||||||||||| | ||||||||||| || ||||||||| || |||||||||||||||| |||||||||||||||||||||    
T  16090011 gaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatca 16089925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 37498853 - 37498953
Alignment:
Q  130 taattaataagaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatc 228  Q
    |||| |||| |||||||||||||||||| ||||||| ||||| || ||||||||| ||  |||||||||||||||| |||||||||||||||||||||||    
T  37498853 taatgaataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatc 37498952  T
Q  229 a 229  Q
    |    
T  37498953 a 37498953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 3830900 - 3831001
Alignment:
Q  142 aaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttcatc 241  Q
    |||||||||||||||| ||||||||||||| || ||||||||| || |||||||||||||||  |||||||||||||||| || |||| |  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  242 tc 243  Q
    ||    
T  3831000 tc 3831001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 6376239 - 6376342
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||||||||||| ||||| ||   ||||||| |  ||||||||| |||||| ||||||||| |||||| ||| ||| |||||||||    
T  6376239 gaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttca 6376338  T
Q  240 tctc 243  Q
    ||||    
T  6376339 tctc 6376342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 14573165 - 14573082
Alignment:
Q  161 tttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttcatctc 243  Q
    |||| |||||| || ||||||||| ||  |||||||||||||||| |||||||||||||||||||||||| || ||| ||||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctc 14573082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 41188960 - 41188859
Alignment:
Q  140 gaaaaagataggtagacatcctttt-tcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||| ||||| |||||| | ||||| || | ||||||| |  |||||| || | |||| |||||||||||||||| |||||||||| |||||    
T  41188960 gaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatcccttttc 41188861  T
Q  239 at 240  Q
    ||    
T  41188860 at 41188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 36315752 - 36315670
Alignment:
Q  140 gaaaaagataggtagacatcct-ttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatca 221  Q
    |||||||||||||||||||||| |||| ||||| || ||||||||| |  |||||| ||||||||| || | |||| ||||||    
T  36315752 gaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatca 36315670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 21390956 - 21391059
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||||||||||  |||  ||||||||    
T  21390956 gaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttca 21391055  T
Q  240 tctc 243  Q
    ||||    
T  21391056 tctc 21391059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 44275896 - 44275793
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    ||||||||||| |||||| ||||||||||||| || ||||||||| || |||||||||||||||| |||||||||||||||||||||||| || |||| |    
T  44275896 gaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttaa 44275797  T
Q  240 tctc 243  Q
    ||||    
T  44275796 tctc 44275793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 6112826 - 6112717
Alignment:
Q  134 taataagaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatcca 233  Q
    ||||| ||||||||||||||||||  ||||||||||||  | |||||||||  | |||| |||||||||||  ||||||||||||||||||||||||||     
T  6112826 taataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcct 6112727  T
Q  234 ttttcatctc 243  Q
    ||||||||||    
T  6112726 ttttcatctc 6112717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 49244005 - 49243916
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatca 229  Q
    |||||||||| ||||||||||||||||||||| || |||||||||  | |||| ||||||||||| ||||||||||||||||||||||||    
T  49244005 gaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatca 49243916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 7217956 - 7217852
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||| ||| ||||||||  |||||| |||||||||||||||||||||||| || ||||     
T  7217956 gaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccctttttt 7217857  T
Q  239 atctc 243  Q
    |||||    
T  7217856 atctc 7217852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 28093096 - 28093200
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtaca-gcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    ||||||||||||||||||||||||||||||||  | |||||||||  || |||| |||||||||||  |||| |||||||||||||||||| || |||||    
T  28093096 gaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttttc 28093195  T
Q  239 atctc 243  Q
    |||||    
T  28093196 atctc 28093200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 35545102 - 35545013
Alignment:
Q  141 aaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggta-ttgtagtaattttacatcatatcatca 229  Q
    ||||||||||||||||| ||||||||||||| |  |||||||||  | |||||||||||||| || ||||||||||||||||||||||||    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatca 35545013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 3672465 - 3672361
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||| | |||||||||||||  | ||||||||| ||| |||| |||||||||||  ||||||| ||||||||||||||| || |||||    
T  3672465 gaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttc 3672366  T
Q  239 atctc 243  Q
    |||||    
T  3672365 atctc 3672361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 31800748 - 31800646
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||| ||||| ||||||||||||| || || |||||| || || ||||||||||||| |||||||||||||||||||||||| || ||||||    
T  31800748 gaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttca 31800649  T
Q  240 tct 242  Q
    |||    
T  31800648 tct 31800646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 42683790 - 42683686
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    ||||||||||| |||||||||||||||||||| || ||||||||| ||  || | ||||||||||| ||||||||||||||||||||| ||||| |||||    
T  42683790 gaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttttc 42683691  T
Q  239 atctc 243  Q
    |||||    
T  42683690 atctc 42683686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 39371118 - 39371014
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| |||||||||||||  | ||||||||| ||  |||| |||||||||||  ||||||||||||||||||||||| || |||||    
T  39371118 gaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttc 39371019  T
Q  239 atctc 243  Q
    |||||    
T  39371018 atctc 39371014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 1815655 - 1815720
Alignment:
Q  178 atgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttcatctc 243  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||    
T  1815655 atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctc 1815720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 2237467 - 2237363
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| |||||||||||||  | ||||||||| ||  | || |||||||||||  ||||||||||||||||||||||| || |||||    
T  2237467 gaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcaccctttttc 2237368  T
Q  239 atctc 243  Q
    |||||    
T  2237367 atctc 2237363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 40887942 - 40888046
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtaca-gcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| ||||||||||||| || |||||||||  || || | |||| |||||| ||||||||||||||||||||| || || |||||    
T  40887942 gaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttttc 40888041  T
Q  239 atctc 243  Q
    |||||    
T  40888042 atctc 40888046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 13347319 - 13347216
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| |||||||||||||  | ||||||||| ||| |||| |||||||||||  ||||||| |||||||||||||||  | |||||    
T  13347319 gaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactctttttc 13347220  T
Q  239 atct 242  Q
    ||||    
T  13347219 atct 13347216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 27553376 - 27553455
Alignment:
Q  142 aaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatca 221  Q
    |||| |||| |||||| ||||||||||||| || ||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatca 27553455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 14831735 - 14831631
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcc-tatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||| ||| |||||||||||||  | ||||||||| || || || |||||||||||  | ||||||||||||||||||||| || |||||    
T  14831735 gaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttttc 14831636  T
Q  239 atctc 243  Q
    |||||    
T  14831635 atctc 14831631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 4300544 - 4300630
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatca 226  Q
    ||||||||| | |||||||||||||| |||||||| | ||||||| |  ||||||||||| |||| || |||||| |||||| ||||    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatca 4300630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 9408094 - 9408143
Alignment:
Q  194 ttaggggtattgtagtaattttacatcatatcatcatccattttcatctc 243  Q
    |||||||||||  ||||||||||||||||||||||| || ||||||||||    
T  9408094 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctc 9408143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 34307138 - 34307239
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacag-cctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||||| | ||||||||||| || |||||||||  || |||||||||||||||| |||||||||||||||||||||||| || |||||    
T  34307138 gaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttc 34307237  T
Q  239 at 240  Q
    ||    
T  34307238 at 34307239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 46901735 - 46901839
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagc-ctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| | | |||| | ||| |||||  ||||||||||||||||||||||| || |||||    
T  46901735 gaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttttc 46901834  T
Q  239 atctc 243  Q
    |||||    
T  46901835 atctc 46901839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 39249864 - 39249967
Alignment:
Q  141 aaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    ||||||||||||||||| | ||||||||||| || ||||||||| ||  |||| ||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  240 tctc 243  Q
    ||||    
T  39249964 tctc 39249967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 2509215 - 2509111
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    ||||||||||||||||||   ||||||||||| || ||||||||| ||| |||| |||||| |||| ||||||||||||||||||||| || || |||||    
T  2509215 gaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttttc 2509116  T
Q  239 atctc 243  Q
    |||||    
T  2509115 atctc 2509111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 19258674 - 19258776
Alignment:
Q  141 aaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttcat 240  Q
    ||||||||||||||||| ||||||| |||||||| | ||||||| || ||||||||||  |||| || |||||| |||||| |||| || || |||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  241 ctc 243  Q
    |||    
T  19258774 ctc 19258776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 28647543 - 28647441
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||| ||||||| |||||||| | ||||||| || ||||||||||  |||| || |||||| |||||| |||| || || ||||||    
T  28647543 gaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttca 28647444  T
Q  240 tct 242  Q
    |||    
T  28647443 tct 28647441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 9642867 - 9642955
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatca 229  Q
    |||||||||||||||||||  ||||| |||||||| ||||| |||    ||||| ||||| | || ||||||||| ||||||||||||||    
T  9642867 gaaaaagataggtagacatttttttttatacatctattatgcacacttcatgtg-tagggatgttttagtaatttcacatcatatcatca 9642955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 3986901 - 3987009
Alignment:
Q  135 aataagaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccat 234  Q
    |||| |||||||||||||||||||| |||||||||||| | ||||||| | || |||| ||| |||||||  |||||||||||||||||| ||||||| |    
T  3986901 aataggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatccct 3987000  T
Q  235 tttcatctc 243  Q
    |||||||||    
T  3987001 tttcatctc 3987009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 3118047 - 3118130
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtaca-gcctatgtgttaggggtattgtagtaattttacatcat 222  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  || |||| ||||||||||| |||||||||||||||||    
T  3118047 gaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcat 3118130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 13697758 - 13697655
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||| ||| ||||||||||||   ||||||||| || ||||||||| | |||| ||||||||||| |||||||||||| || ||||||    
T  13697758 gaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttca 13697659  T
Q  240 tctc 243  Q
    ||||    
T  13697658 tctc 13697655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 24208634 - 24208531
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||||||||||||||||||||||| ||||| || | || |||| |  |||||||||||||||| ||||||||| |||||| ||| ||| || ||||||    
T  24208634 gaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttca 24208535  T
Q  240 tctc 243  Q
    ||||    
T  24208534 tctc 24208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 15345660 - 15345762
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccattttca 239  Q
    |||||| ||||||||||||| |||||||||||  | ||||||||| ||||||| ||||||| |||  |||||||| | |||||||||||| |  ||||||    
T  15345660 gaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttca 15345759  T
Q  240 tct 242  Q
    |||    
T  15345760 tct 15345762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 14023126 - 14023021
Alignment:
Q  138 aagaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaattttacatcatatcatcatccatttt 237  Q
    |||||||||||||||||||| ||||||| ||||| ||   ||||||| |  |||||||||||||||| ||||||||| |||||| ||| ||| || || |    
T  14023126 aagaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgt 14023027  T
Q  238 catctc 243  Q
    ||||||    
T  14023026 catctc 14023021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 87163 - 87239
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcctatgtgttaggggtattgtagtaatttta 216  Q
    |||||||||||||||||| | ||||||||||| |||||||||||| || |||||||||||||||| |||||||||||    
T  87163 gaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaatttta 87239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 6909 - 6805
Alignment:
Q  140 gaaaaagataggtagacatcctttttcatacatcttttatgtacagcct-atgtgttaggggtattgtagtaattttacatcatatcatcatccattttc 238  Q
    |||||||||||||||| | | |||||||||||  | ||||||||| ||| |||| |||||| ||||  ||||||||||||||||||||||| || |||||    
T  6909 gaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctttttc 6810  T
Q  239 atctc 243  Q
    |||||    
T  6809 atctc 6805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University