View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20426_high_5 (Length: 319)
Name: NF20426_high_5
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20426_high_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 6353706 - 6353415
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
6353706 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaat |
6353607 |
T |
|
| Q |
118 |
gatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcgatttcccttaccctcgaaggggaagaaccggcagaagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6353606 |
gatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcaagcgatttcccttaccctcgaaggggaagaactggcagaagaa |
6353507 |
T |
|
| Q |
218 |
aaactaaaacaggttaggctacaaacacttgtgtcatattttggactaaacatgtgnnnnnnnggttgatccaaatgtttaccctgcctatg |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
6353506 |
aaactaaaacaggttaggccacaaacacttctgtcagattttggactaaacatgtgtttttttggttgatccaaatgtttaccctgcttatg |
6353415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 6290614 - 6290420
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6290614 |
attagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaat |
6290515 |
T |
|
| Q |
118 |
gatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcgatttcccttaccctcgaaggggaagaaccggcag |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
6290514 |
gatttaggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcaatttcccttaccctcgaaggggaagaaccggcag |
6290420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 6425392 - 6425200
Alignment:
| Q |
22 |
gtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgatt |
121 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
6425392 |
gtgtactatagacaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatt |
6425293 |
T |
|
| Q |
122 |
tgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcgatttcccttaccctcgaaggggaagaaccggcagaa |
214 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| | ||||||| ||||||||| || ||||||||||||||||| ||||| ||||||| |
|
|
| T |
6425292 |
tgggtgagcctgactcgaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaacaggcagaa |
6425200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 7460778 - 7460552
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
7460778 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaat |
7460679 |
T |
|
| Q |
118 |
gatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcgatttcccttaccctcgaaggggaagaaccggcagaagaa |
217 |
Q |
| |
|
|| |||||||| || ||| |||| || ||||| |||| || ||| ||| | | | || ||||||||||||||||||||||||||||||| | |
|
|
| T |
7460678 |
gacttgggtgatcccgaccagaaagctagcttggctcgtcctgttgctggaggacctggaaacttgccttaccctcgaaggggaagaaccggcagaaaac |
7460579 |
T |
|
| Q |
218 |
aaactaaaacaggttaggctacaaaca |
244 |
Q |
| |
|
| |||||| |||||||||| |||||| |
|
|
| T |
7460578 |
catctaaaaaaggttaggctccaaaca |
7460552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 6364578 - 6364469
Alignment:
| Q |
19 |
ttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatg |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6364578 |
ttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatg |
6364479 |
T |
|
| Q |
119 |
atttgggtga |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
6364478 |
atttgggtga |
6364469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 6392202 - 6392094
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
6392202 |
attactgtactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaat |
6392103 |
T |
|
| Q |
118 |
gatttgggt |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
6392102 |
gatttgggt |
6392094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 6411366 - 6411258
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
6411366 |
attagtgtactacatcaaagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaat |
6411267 |
T |
|
| Q |
118 |
gatttgggt |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
6411266 |
gatttgggt |
6411258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 6371410 - 6371300
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
6371410 |
attagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgtctacaat |
6371311 |
T |
|
| Q |
118 |
gatttgggtga |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
6371310 |
gatttgggtga |
6371300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 6333290 - 6333173
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||| || ||||| |||||||| |||||| |
|
|
| T |
6333290 |
attagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatgtttacaat |
6333191 |
T |
|
| Q |
118 |
gatttgggtgagcctgac |
135 |
Q |
| |
|
|| |||||||| |||||| |
|
|
| T |
6333190 |
gacttgggtgatcctgac |
6333173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 6275862 - 6275745
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| || |||||||| || || ||||| ||||||||||||||| |
|
|
| T |
6275862 |
attagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaat |
6275763 |
T |
|
| Q |
118 |
gatttgggtgagcctgac |
135 |
Q |
| |
|
||| ||||||| |||||| |
|
|
| T |
6275762 |
gatgtgggtgatcctgac |
6275745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 6322723 - 6322606
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||||||| |||||| |
|
|
| T |
6322723 |
attagtctactatagagaagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaacacgatagaatctatgactacgatgtttacaat |
6322624 |
T |
|
| Q |
118 |
gatttgggtgagcctgac |
135 |
Q |
| |
|
|| |||||||| |||||| |
|
|
| T |
6322623 |
gacttgggtgatcctgac |
6322606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 6265030 - 6264927
Alignment:
| Q |
25 |
tactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgatttgg |
124 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||||||||||| || |||||||| |||||||| ||| | |||||||| ||||| ||||||||||||| |
|
|
| T |
6265030 |
tactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttgg |
6264931 |
T |
|
| Q |
125 |
gtga |
128 |
Q |
| |
|
|||| |
|
|
| T |
6264930 |
gtga |
6264927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 6458352 - 6458262
Alignment:
| Q |
35 |
aagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgatttggg |
125 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||||||||||||| ||| ||||||| | |||||||| ||| | || ||||||||||| |
|
|
| T |
6458352 |
aagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttggg |
6458262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 6452259 - 6452174
Alignment:
| Q |
35 |
aagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgat |
120 |
Q |
| |
|
||||||| ||| ||| | |||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| || |||||| |
|
|
| T |
6452259 |
aagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgat |
6452174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 42694481 - 42694394
Alignment:
| Q |
35 |
aagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgattt |
122 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
42694481 |
aagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgattt |
42694394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 9603066 - 9603168
Alignment:
| Q |
18 |
attagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaat |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||| ||| | |||||||| |||||||||||| |
|
|
| T |
9603066 |
attagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat |
9603165 |
T |
|
| Q |
118 |
gat |
120 |
Q |
| |
|
||| |
|
|
| T |
9603166 |
gat |
9603168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 36743922 - 36744021
Alignment:
| Q |
26 |
actacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgatttggg |
125 |
Q |
| |
|
|||||||||| | ||||||| | |||||||| ||||||||||| | | |||| |||||||||| ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
36743922 |
actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg |
36744021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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