View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20426_high_8 (Length: 298)
Name: NF20426_high_8
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20426_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 34425560 - 34425844
Alignment:
| Q |
13 |
aatattcataggtcatgtaaaatgttttgatcaatgaatgaaacagaaccagaagagatgataagtagcattagaactaacctcgtgaagaacacgtcga |
112 |
Q |
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| T |
34425560 |
aatattcataggtcatgtaaaatgttttgatcaatgaatgagacagaaccagaagagatgataagtagcattagaactaacctcgtgaagaacacgtcga |
34425659 |
T |
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| Q |
113 |
atctttatgcttgcgatgggaacattataaggacagtgagaggtcaaggaatttgcaagatccttgattgttgaaatatctgaatcactaggaaagcact |
212 |
Q |
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| T |
34425660 |
atctttatgcttgcgatgagaacattataaggacagtgagaggtcaaggaatttgcaagatccttgattgttgaaatatctgaatcactaggaaagcact |
34425759 |
T |
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| Q |
213 |
gtctgaaataagctattattcgtgaatcgcgcaccagacgagcatccttttgagcaggcaccctagggaaacaagtagggatatt |
297 |
Q |
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| T |
34425760 |
gtctgaaataagctattattcgtgaatcgcgcaccagacgagcatccttttgagcaggcaccctagggaaacaagtagggatatt |
34425844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 63 - 286
Target Start/End: Original strand, 34418462 - 34418685
Alignment:
| Q |
63 |
agaagagatgataagtagcattagaactaacctcgtgaagaacacgtcgaatctttatgcttgcgatgggaacattataaggacagtgagaggtcaagga |
162 |
Q |
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| T |
34418462 |
agaagatatgataagtgacattagaaccaacctcacgatgaacatgtcgaatttttatgcttgcaatgggaacttgataaggacagtgagatgtcaagga |
34418561 |
T |
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| Q |
163 |
atttgcaagatccttgattgttgaaatatctgaatcactaggaaagcactgtctgaaataagctattattcgtgaatcgcgcaccagacgagcatccttt |
262 |
Q |
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| T |
34418562 |
atgtgcagtttccttgtgcgttgaaatacctgaatcactaggaaagcactgctcgaaataagccactattcgttcctcgcgcaggagacgagcttccttt |
34418661 |
T |
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| Q |
263 |
tgagcaggcaccctagggaaacaa |
286 |
Q |
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| T |
34418662 |
tgaacaatctccctggggaaacaa |
34418685 |
T |
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