View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20426_low_1 (Length: 696)
Name: NF20426_low_1
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20426_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 38212101 - 38211722
Alignment:
| Q |
20 |
aaggagcaacgcaattgaaaaattacttcaaccaccgtaattttgtgaagcgacaaagtgtaacatttgttgaagttatgataacttactatgattttat |
119 |
Q |
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| T |
38212101 |
aaggagcaatgcaattgaaaaattacttcaaccaccgtaattttgtgaagctacaaagtgtaacatttgttaaaattatgataacttactatgattttat |
38212002 |
T |
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| Q |
120 |
ccaactcatggttcactcaaatataaatatggacgaagacggtcttcttcaaccagggatacgtgacatgatgatagtcaagataccccttgtcagtctg |
219 |
Q |
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| T |
38212001 |
ccatctcacggttcactcaaatataaatatggacgaagacggtctttttcaaccagggatacgtgacatgatgatagtcaaaataccccttgtcagtctg |
38211902 |
T |
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| Q |
220 |
gttagatgcttgtcattttcaggcttgttctccaaatattgtttgattttgttgtgagttgttgggaccacaatgctagttttgtgattgtttttcaacc |
319 |
Q |
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| T |
38211901 |
gttagatgctagtcattttcaggcttgttctccaaatattgtttgattttgttgtga---gttgggaccacaatgctagttttgtgattgtttttcaacc |
38211805 |
T |
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| Q |
320 |
tgtcacagagtttcgtgattgttttgaatttattttgtaaacaaacaaaataaaagaggaacaaaccaatgacttcgtacgta |
402 |
Q |
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| T |
38211804 |
tgtcatagagtttcgtgattgttttgaatttattttgtaaacaaacaaaataaaagatgaacaaaccaatgacttcgtacgta |
38211722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 473 - 682
Target Start/End: Complemental strand, 38211652 - 38211443
Alignment:
| Q |
473 |
gtccttcattggcaaactagaacaaattttggatatgttttggtgcatttaattagttcccaaaacatcttatttgaggtgttttttgaatggtgttaga |
572 |
Q |
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| T |
38211652 |
gtccttcattggcaaactagaacaaattttggatatgttttggtgcatttaattagttcccaaaacatctgatttgaggtgttttttgaatggtgttaga |
38211553 |
T |
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| Q |
573 |
aatatctcaacaagtcttatgtaaaatcaatcatacttgaattcacctaatactgtgatgaaaaattggtataaagttgcatgtgatgtcttatgttggc |
672 |
Q |
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| T |
38211552 |
aatatctcaacaagtcttatgtaaaatcaatcatacttgaattcacctaatactgtgatgaaaaattggtataaagttgcatgtgatgtcttatgttggc |
38211453 |
T |
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| Q |
673 |
aggttgttgc |
682 |
Q |
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| T |
38211452 |
aggttgttgc |
38211443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 13342461 - 13342493
Alignment:
| Q |
49 |
aaccaccgtaattttgtgaagcgacaaagtgta |
81 |
Q |
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| T |
13342461 |
aaccaccgtaattttgtgaagctacaaagtgta |
13342493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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