View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20426_low_11 (Length: 275)

Name: NF20426_low_11
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20426_low_11
NF20426_low_11
[»] chr5 (2 HSPs)
chr5 (1-257)||(39184758-39185014)
chr5 (1-121)||(8730292-8730410)
[»] chr1 (4 HSPs)
chr1 (3-132)||(42373538-42373667)
chr1 (12-248)||(17032753-17032996)
chr1 (24-136)||(19597952-19598064)
chr1 (66-134)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (23-140)||(16501182-16501300)
chr4 (66-134)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (15-141)||(31902910-31903036)
chr2 (15-170)||(39339357-39339512)
chr2 (1-121)||(25505497-25505615)
chr2 (13-126)||(22886011-22886124)
[»] chr3 (3 HSPs)
chr3 (2-98)||(25595121-25595217)
chr3 (15-136)||(17501759-17501880)
chr3 (25-123)||(1653452-1653550)
[»] chr8 (4 HSPs)
chr8 (12-139)||(9519052-9519179)
chr8 (72-134)||(34866640-34866702)
chr8 (47-126)||(10551752-10551832)
chr8 (66-134)||(34389590-34389658)
[»] chr6 (1 HSPs)
chr6 (23-134)||(12793553-12793664)
[»] chr7 (6 HSPs)
chr7 (13-134)||(37792747-37792868)
chr7 (72-134)||(38484991-38485053)
chr7 (15-170)||(47326396-47326551)
chr7 (72-141)||(3420242-3420311)
chr7 (23-126)||(12480298-12480402)
chr7 (66-134)||(38305676-38305744)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 39184758 - 39185014
Alignment:
Q  1 acgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  39184758 acgatagagccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacgaaacacaactacaaaacata 39184857  T
Q  101 ggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaacaaccaac 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39184858 ggcaacgacgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtcgccggagtaaacaaccaac 39184957  T
Q  201 cccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaa 257  Q
    ||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  39184958 cccatgaacctgcggaactgaccgaatggaagctgatctcagcaacaaaatcaccaa 39185014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8730410 - 8730292
Alignment:
Q  1 acgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatg 100  Q
    ||||||||| || |||||| ||||||||| | ||||| | |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| |    
T  8730410 acgatagagacagaactacactgccaaactgtctcac-atgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacg 8730313  T
Q  101 ggcaacgacgccagtttgaag 121  Q
    |||| |||||||||| |||||    
T  8730312 ggcagcgacgccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 42373667 - 42373538
Alignment:
Q  3 gatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatggg 102  Q
    ||||||| ||||||||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||||||| ||||||| |||    
T  42373667 gatagagacaaaactacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaaacacaacttcaaaacacggg 42373568  T
Q  103 caacgacgccagtttgaagcggaatcacaa 132  Q
    ||||||| || |||||||||||||||||||    
T  42373567 caacgacaccggtttgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 17032996 - 17032753
Alignment:
Q  12 aaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaagacgaaacacaactac-aaaacatgggcaacg 107  Q
    |||||||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| ||||||||||||  |||| || ||||||  || |  |    
T  17032996 aaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaagacgaaatccaacaacaaaaacacaggtagtg 17032897  T
Q  108 acgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaac---aaccaacccca 204  Q
    || || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |  |||| ||||||||||   ||||||  |||    
T  17032896 accccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttccgtcgtcggagtaaacaaaaaccaagtcca 17032797  T
Q  205 ttaacctgcggaactgacccaatcgaagccgatctcagcaacaa 248  Q
    | |||||||  |||||||  |||||| ||| |||||||||||||    
T  17032796 tgaacctgcaaaactgactgaatcgacgccaatctcagcaacaa 17032753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 19598064 - 19597952
Alignment:
Q  24 ccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 122  Q
    ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | ||||||| ||||| |||| ||| |||| ||||||||||||| || |||||     
T  19598064 ccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaacgacgccggtctgaagt 19597966  T
Q  123 ggaatcacaaccta 136  Q
    |||| |||||||||    
T  19597965 ggaaacacaaccta 19597952  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  66 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 134  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  23 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 121  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  122 cggaatcacaacctaaatc 140  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  66 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 134  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  15 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 113  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  114 gtttgaagcggaatcacaacctaaatca 141  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  15 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 113  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  114 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 170  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 25505497 - 25505615
Alignment:
Q  1 acgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatg 100  Q
    ||||||||| || |||||| ||||||||| | ||||| | |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| |    
T  25505497 acgatagagacagaactacactgccaaactgtctcac-atgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacg 25505594  T
Q  101 ggcaacgacgccagtttgaag 121  Q
    |||| |||||||||| |||||    
T  25505595 ggcagcgacgccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 22886011 - 22886124
Alignment:
Q  13 aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgc 111  Q
    |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||||||    
T  22886011 aaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgc 22886109  T
Q  112 cagtttgaagcggaa 126  Q
    |||| ||||||||||    
T  22886110 cagtctgaagcggaa 22886124  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 25595121 - 25595217
Alignment:
Q  2 cgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 98  Q
    |||||||| | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595121 cgatagagacgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  15 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 113  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  114 gtttgaagcggaatcacaaccta 136  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  25 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 122  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 9519179 - 9519052
Alignment:
Q  12 aaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacg 110  Q
    |||||||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || |||||||||| |||| |||||||| ||||| |||||    
T  9519179 aaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaacccaacaacaaaacacgggcagcgacg 9519081  T
Q  111 ccagtttgaagcggaatcacaacctaaat 139  Q
    |  ||||||||||| | ||||||| ||||    
T  9519080 ctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  72 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 134  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  47 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 126  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  66 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 134  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  23 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 121  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  122 cggaatcacaacc 134  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 37792868 - 37792747
Alignment:
Q  13 aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgc 111  Q
    ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| | || |||| ||||| ||||  ||||||| || |||||||||    
T  37792868 aaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaagagaaagatgaaacccaacagcaaaacacggacaacgacgc 37792770  T
Q  112 cagtttgaagcggaatcacaacc 134  Q
    | ||||||||||||| |||||||    
T  37792769 cggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  72 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 134  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  15 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 113  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  114 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 170  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  72 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 141  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  23 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 120  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  121 gcggaa 126  Q
    | ||||    
T  12480303 gtggaa 12480298  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  66 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 134  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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