View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20426_low_16 (Length: 234)

Name: NF20426_low_16
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20426_low_16
NF20426_low_16
[»] chr5 (4 HSPs)
chr5 (11-209)||(7433853-7434047)
chr5 (16-101)||(10505089-10505176)
chr5 (81-172)||(10523556-10523647)
chr5 (82-188)||(36130347-36130452)
[»] chr8 (7 HSPs)
chr8 (40-143)||(6312518-6312621)
chr8 (11-170)||(44260847-44261007)
chr8 (77-188)||(26024746-26024857)
chr8 (130-209)||(6312558-6312637)
chr8 (78-192)||(26024792-26024906)
chr8 (58-129)||(392107-392176)
chr8 (102-142)||(4378925-4378965)
[»] chr4 (6 HSPs)
chr4 (11-175)||(34747215-34747379)
chr4 (63-160)||(47547718-47547814)
chr4 (119-178)||(47547605-47547664)
chr4 (103-175)||(31199052-31199123)
chr4 (26-157)||(9127185-9127318)
chr4 (80-207)||(8492245-8492374)
[»] chr1 (11 HSPs)
chr1 (11-208)||(14587937-14588128)
chr1 (11-140)||(15256574-15256705)
chr1 (76-192)||(14588463-14588579)
chr1 (50-116)||(26921425-26921490)
chr1 (80-184)||(46572428-46572532)
chr1 (82-192)||(15256795-15256904)
chr1 (99-184)||(46572595-46572680)
chr1 (104-184)||(46572699-46572779)
chr1 (118-181)||(15256781-15256844)
chr1 (76-188)||(46572721-46572832)
chr1 (127-207)||(26921452-26921532)
[»] chr3 (3 HSPs)
chr3 (81-189)||(40542362-40542470)
chr3 (121-208)||(40542393-40542480)
chr3 (122-179)||(40542834-40542891)
[»] chr2 (2 HSPs)
chr2 (11-122)||(37772020-37772133)
chr2 (11-89)||(45139504-45139584)


Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 7434047 - 7433853
Alignment:
Q  11 agaaaatgagagagaaagtttggatgatgtcagtgttatgtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaatga 110  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||     
T  7434047 agaaaatgagagagaaagtttggatgatctcagtgttatgtaaaacaaaaggttaaatgggcaataatcttgtagttatctatcggaggtacaaaaatgg 7433948  T
Q  111 aattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatccgataattatctattggatgtacaaaatag 209  Q
    ||||||||||||||||||||||||| ||||||| | ||||| | |||| |||||||||||||||| ||    || ||||||||||||||||||||||||    
T  7433947 aattttaaaaatgaacatccggtagttatctaccggaggtagataatggaaatttttaaaatgaacat----tagttatctattggatgtacaaaatag 7433853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 10505176 - 10505089
Alignment:
Q  16 atgagagagaaagtttggatgatgtcag--tgttatgtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggta 101  Q
    |||||||| ||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  10505176 atgagagaaaaagtttggatgatgtttgcttgttatgtaaaacaaaaggttaaatgggcaataatccggtagttatctatctgaggta 10505089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 10523556 - 10523647
Alignment:
Q  81 ggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaat 172  Q
    |||||||||||| |  ||||| ||||  |||||||| |||||||||||||||||| |||||||   ||||| |||||| |||||||||||||    
T  10523556 ggtagttatttaccataggtagaaaatagaaatttttaaaatgaacatccggtagttatctaccaaaggtataaaatggaaatttttaaaat 10523647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 36130452 - 36130347
Alignment:
Q  82 gtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatccg 181  Q
    ||||| || ||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||| |  || | |||||  |||||||||||||||| |||      
T  36130452 gtagtaatctatcggaggtagaaaattgaaatttt-aaaatgaacacccggtagttatctaccgagggcacaaaatagaaatttttaaaatgaacatcta 36130354  T
Q  182 ataatta 188  Q
    |||||||    
T  36130353 ataatta 36130347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 6312518 - 6312621
Alignment:
Q  40 tcagtgttatgtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatat 139  Q
    |||| |||||||||||||||| |||||||| |||||||| |||||||||| || |||||||| ||||  |||||||| |||||||||||||| ||| |||    
T  6312518 tcagggttatgtaaaacaaaatgttaaatgagcaataattcggtagttatctaacggaggtagaaaatcgaaatttttaaaatgaacatccgatagttat 6312617  T
Q  140 ctac 143  Q
    ||||    
T  6312618 ctac 6312621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 44260847 - 44261007
Alignment:
Q  11 agaaaatgagagagaaagtttggatgatgtcagt--gttatgtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaat 108  Q
    |||| |||||||||||| | ||||||||||  ||  |||||||||||||| | | ||| |||||||||||||| ||||||| ||||| |||||| |||||    
T  44260847 agaagatgagagagaaattatggatgatgtatgtttgttatgtaaaacaatatgctaagtgggcaataatccgttagttatctatcgaaggtac-aaaat 44260945  T
Q  109 gaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaa 170  Q
     ||||||| ||||||||||||||  |  |||||||   ||||| ||||||||| ||||||||    
T  44260946 caaatttttaaaatgaacatccgacaattatctaccagaggtagaaaatgaaattttttaaa 44261007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 26024857 - 26024746
Alignment:
Q  77 atccggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaat 176  Q
    |||| ||| ||||||| |||| ||||||||  |||| ||| |||||||| ||||| ||| ||||||||  ||||| ||||||||| |||||||||||||     
T  26024857 atcctgtatttatttaccggatgtacaaaatggaaaattttaaaatgaatatccgatagttatctactaaaggtacaaaatgaaattttttaaaatgaac 26024758  T
Q  177 atccgataatta 188  Q
    ||| | ||||||    
T  26024757 atctggtaatta 26024746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 6312558 - 6312637
Alignment:
Q  130 cggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatccgataattatctattggatgtacaaaatag 209  Q
    |||||| ||||||  | ||||| |||||  |||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  6312558 cggtagttatctaacggaggtagaaaatcgaaatttttaaaatgaacatccgatagttatctaccggatgtacaaaatag 6312637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 26024906 - 26024792
Alignment:
Q  78 tccggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaata 177  Q
    |||||||||||| || | |||||| ||||   ||||||| || |||||||||| |||  ||| ||| | | ||| |||||| ||| ||||||||||||||    
T  26024906 tccggtagttatctaccagaggtagaaaatgcaaatttttaacatgaacatcctgtatttatttaccggatgtacaaaatggaaaattttaaaatgaata 26024807  T
Q  178 tccgataattatcta 192  Q
    ||||||| |||||||    
T  26024806 tccgatagttatcta 26024792  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 392176 - 392107
Alignment:
Q  58 aaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatc 129  Q
    |||||||||||||||||||| ||||||||||| || ||| | ||| |||||||||||||  |||||||||||    
T  392176 aaaggttaaatgggcaataaaccggtagttatctaccggtgatac-aaaatgaaatttt-taaatgaacatc 392107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 4378965 - 4378925
Alignment:
Q  102 caaaaatgaaattttaaaaatgaacatccggtagatatcta 142  Q
    ||||||||||| ||| |||||||||||||||||| ||||||    
T  4378965 caaaaatgaaaattttaaaatgaacatccggtagttatcta 4378925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 34747379 - 34747215
Alignment:
Q  11 agaaaatgagagagaaagtttggatgatgtcagt--gttatgtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaat 108  Q
    |||| ||| |||||||||||| ||||| ||| ||  ||||||||||||||| ||||||||||||||||||| |||||||||  | ||||||||| ||| |    
T  34747379 agaagatgggagagaaagtttcgatgacgtctgtttgttatgtaaaacaaa-ggttaaatgggcaataatcgggtagttatccaccggaggtac-aaagt 34747282  T
Q  109 gaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaa 175  Q
    | ||||||  ||||||||||| ||||| || |||| | ||||| |||||| |||||||||| |||||    
T  34747281 ggaatttttgaaatgaacatctggtagctaactaccggaggtagaaaatggaaatttttaatatgaa 34747215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 47547814 - 47547718
Alignment:
Q  63 ttaaatgggcaataatccggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaa 160  Q
    |||||||||||||||||  ||| |||||||| |||||||| ||||| || |||| |||||||||||||| |||  |||||||| ||||| ||||||||    
T  47547814 ttaaatgggcaataatcaagtatttatttatgggaggtac-aaaataaattttttaaaatgaacatccgatagtcatctactggaggtagaaaatgaa 47547718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 47547664 - 47547605
Alignment:
Q  119 aaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatat 178  Q
    ||||||||||||| ||| ||||||||| ||||| ||||||||| ||||||||||||||||    
T  47547664 aaatgaacatccgatagttatctactggaggtagaaaatgaaattttttaaaatgaatat 47547605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 31199052 - 31199123
Alignment:
Q  103 aaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaa 175  Q
    |||||||||||||| |||||||||||||||||| ||||||| | | ||| ||||||  |||||||||||||||    
T  31199052 aaaaatgaaatttttaaaatgaacatccggtagttatctaccggatgtacaaaatg-gaatttttaaaatgaa 31199123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 9127318 - 9127185
Alignment:
Q  26 aagtttggatgatgtcagt--gttatgt-aaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaatgaaattttaaaaat 122  Q
    |||||||||||||||  ||  ||||||| |||| |||||||||| |||||||||||||| ||||||| |||| ||| ||| || ||| || ||| ||||     
T  9127318 aagtttggatgatgtatgtttgttatgtcaaaaaaaaaggttaattgggcaataatccgatagttatctatctgagttac-aatatgtaacttttaaaag 9127220  T
Q  123 gaacatccggtagatatctactgtaggtaaaaaat 157  Q
    |||||| |||||| || |||| | ||||| |||||    
T  9127219 gaacattcggtagttaactaccggaggtagaaaat 9127185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 8492374 - 8492245
Alignment:
Q  80 cggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttt--taaaatgaata 177  Q
    |||||||||| || |||||  ||||||  |||||||| |||| ||||||||||||| ||||||| | | | | |||||  |||||||   |||||||| |    
T  8492374 cggtagttatctaccggagtaacaaaatcgaaattttgaaaaggaacatccggtagttatctaccggaagaacaaaatcgaaattttaaaaaaatgaaca 8492275  T
Q  178 tccgataattatctattggatgtacaaaat 207  Q
    || ||||||||||||  |||| ||||||||    
T  8492274 tctgataattatctaccggatatacaaaat 8492245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 14588128 - 14587937
Alignment:
Q  11 agaaaatgagagagaaagtttggatgatgtcagtgttatgtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaatga 110  Q
    ||||||||||||||||||||||| ||||||     ||  |||||| | |||||||||||||||||||||||||||| || || ||||||||| | |||||    
T  14588128 agaaaatgagagagaaagtttggttgatgt-----tttagtaaaa-agaaggttaaatgggcaataatccggtagtgatctaccggaggtac-ataatga 14588036  T
Q  111 aattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaa-atttttaaaatgaatatccgataattatctattggatgtacaaaata 208  Q
    ||||||  |||| ||||  |||||| ||||||||  ||||| |||||||||  ||||||||||||| ||| | || |||||||   |||||||||||||    
T  14588035 aattttttaaattaacaatcggtagctatctactagaggtagaaaatgaaatttttttaaaatgaacatctggtagttatctaccagatgtacaaaata 14587937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 15256705 - 15256574
Alignment:
Q  11 agaaaatgagagagaaagtttggatgatgtcagt--gttatgtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaat 108  Q
    |||| ||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||| | ||||  |||||||||| | | ||||||  |||||    
T  15256705 agaagatgagagagaaagtttggatgatatccgtttgttatgtaaaacaaaaggttaaatgggtactaatttggtagttattcaccagaggta-gaaaat 15256607  T
Q  109 gaaa-ttttaaaaatgaacatccggtagatatc 140  Q
    |||| |||| ||||||||| |||| ||| ||||    
T  15256606 gaaattttttaaaatgaacttccgttagttatc 15256574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 14588463 - 14588579
Alignment:
Q  76 aatccggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaa 175  Q
    |||||| ||||||| || |||| ||| |||| | ||||||| ||||||||| ||| |||| ||||||||  |  || |||||| ||||||||||||||||    
T  14588463 aatccgatagttatctaccggatgtataaaattaaaatttttaaaatgaacttccagtagttatctactagatatacaaaatgtaaatttttaaaatgaa 14588562  T
Q  176 tatccgataattatcta 192  Q
     ||||||||||||||||    
T  14588563 catccgataattatcta 14588579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 26921425 - 26921490
Alignment:
Q  50 gtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaatgaaatttt 116  Q
    ||||||||||||| |||||| |||||||||||| |||||| || |||||||| ||||||||||||||    
T  26921425 gtaaaacaaaaggctaaatgagcaataatccggcagttatctaccggaggta-aaaaatgaaatttt 26921490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 46572428 - 46572532
Alignment:
Q  80 cggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatc 179  Q
    |||||||||| || | |||||| |||| | ||||||| |||||||| || |||||| |||| || | ||||| ||||||||| |||||||||||||  ||    
T  46572428 cggtagttatctacctgaggtataaaattaaaatttttaaaatgaatattcggtagttatccaccgaaggtataaaatgaaattttttaaaatgaacgtc 46572527  T
Q  180 cgata 184  Q
    |||||    
T  46572528 cgata 46572532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 15256795 - 15256904
Alignment:
Q  82 gtagttatttatcggaggtacaaaaatgaaatttta-aaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatcc 180  Q
    |||||||| || |||||||| |||| |||||||||  |||||||||||||||| | ||||||| | ||||| |||||| ||| |||||||||||| |||     
T  15256795 gtagttatctaccggaggtataaaa-tgaaattttttaaaatgaacatccggtggttatctaccggaggtataaaatggaaa-ttttaaaatgaacatct 15256892  T
Q  181 gataattatcta 192  Q
    |||| |||||||    
T  15256893 gatagttatcta 15256904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 46572595 - 46572680
Alignment:
Q  99 gtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatccgata 184  Q
    ||||||||  || ||||| ||||||||||||||||||| || ||||  | ||| ||||||||| ||||||||||||| || |||||    
T  46572595 gtacaaaatggagatttttaaaatgaacatccggtagacatttactagatgtacaaaatgaaattttttaaaatgaacattcgata 46572680  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 46572699 - 46572779
Alignment:
Q  104 aaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatccgata 184  Q
    ||||||||| ||| |||||||| ||||||||| ||| |||   | ||| |||||||| |||||||||||||| ||||||||    
T  46572699 aaaatgaaaattttaaaatgaaaatccggtagttatataccagatgtacaaaatgaagatttttaaaatgaacatccgata 46572779  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 15256781 - 15256844
Alignment:
Q  118 aaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatccg 181  Q
    ||||||||||||  |||| ||||||| | ||||| ||||||||| ||||||||||||| |||||    
T  15256781 aaaatgaacatcaagtagttatctaccggaggtataaaatgaaattttttaaaatgaacatccg 15256844  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 46572721 - 46572832
Alignment:
Q  76 aatccggtagttatttatcggaggtacaaaaatgaa-attttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatga 174  Q
    |||||||||||||| || | || |||| |||||||| ||||| |||||||||||||| |||  | |||| | |||||||| ||  |||||||| ||||||    
T  46572721 aatccggtagttatataccagatgtac-aaaatgaagatttttaaaatgaacatccgatagtcaactaccggaggtaaaacat-taaattttttaaatga 46572818  T
Q  175 atatccgataatta 188  Q
    | ||||||||||||    
T  46572819 acatccgataatta 46572832  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 26921452 - 26921532
Alignment:
Q  127 atccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatccgataattatctattggatgtacaaaat 207  Q
    |||||| || ||||||| | ||||||||||||||| |||||||||| || || ||||  |||||||  ||||| |||||||    
T  26921452 atccggcagttatctaccggaggtaaaaaatgaaattttttaaaataaacattcgattgttatctacgggatgcacaaaat 26921532  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 40542470 - 40542362
Alignment:
Q  81 ggtagttatttatcggaggtacaaaaatgaaattttaaaaatgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatcc 180  Q
    ||||||||| || | |||||| ||||   |||||||||||||||||||||||||| ||||||| | |  || ||||| | ||||||||||||||||||||    
T  40542470 ggtagttatctaccagaggtagaaaatgaaaattttaaaaatgaacatccggtagttatctaccggatatacaaaataagaatttttaaaatgaatatcc 40542371  T
Q  181 gataattat 189  Q
     ||| ||||    
T  40542370 aatagttat 40542362  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 40542480 - 40542393
Alignment:
Q  121 atgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatccgataattatctattggatgtacaaaata 208  Q
    ||||||||  ||||| |||||||   ||||| |||||||||||||| |||||||| ||||| || |||||||  |||| |||||||||    
T  40542480 atgaacatttggtagttatctaccagaggtagaaaatgaaaattttaaaaatgaacatccggtagttatctaccggatatacaaaata 40542393  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 40542834 - 40542891
Alignment:
Q  122 tgaacatccggtagatatctactgtaggtaaaaaatgaaaatttttaaaatgaatatc 179  Q
    |||||||||||||| |||||||   ||||| |||||| ||| ||||||||||||||||    
T  40542834 tgaacatccggtagttatctaccagaggtagaaaatggaaaattttaaaatgaatatc 40542891  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 37772133 - 37772020
Alignment:
Q  11 agaaaatgagagagaaagtttggatgatgtcag--tgttatgtaaaacaaaaggttaaatgggcaataatccggtagttatttatcggaggtacaaaaat 108  Q
    |||| ||||||||||||||||||||||| |  |  ||||| ||||| |||||||||||||| | |||| | || ||||||| || |||||||| ||||      
T  37772133 agaagatgagagagaaagtttggatgatatttgtctgttaagtaaaccaaaaggttaaatgagaaatatttcgatagttatctaccggaggtagaaaata 37772034  T
Q  109 gaaattttaaaaat 122  Q
    |||||||| |||||    
T  37772033 gaaatttttaaaat 37772020  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 45139504 - 45139584
Alignment:
Q  11 agaaaatgagagagaaagtttggatgatg--tcagtgttatgtaaaacaaaaggttaaatgggcaataatccggtagttat 89  Q
    |||| ||||||||||||||||||||||||  ||  ||||| |||||||||||| |||||| | | |||||||  |||||||    
T  45139504 agaagatgagagagaaagtttggatgatgtctctttgttaagtaaaacaaaagattaaattgactataatccaatagttat 45139584  T

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