View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20426_low_17 (Length: 212)
Name: NF20426_low_17
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20426_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 45181419 - 45181567
Alignment:
| Q |
19 |
atcagtcatgatatccaattggttcttcgtatttgtcccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
45181419 |
atcagtcatgatatccaattggttcttcctatttgtccgaggaaacaatggcctcccagtaagcacttctgcaaa-tatgcatccaatgctccaaatatc |
45181517 |
T |
|
| Q |
119 |
aattccaggggtataccgcataagacaaggattataaattacatgcatat |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45181518 |
aattccaggggtataccgcataagacaaggattataaattacatgcatat |
45181567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 45174527 - 45174690
Alignment:
| Q |
19 |
atcagtcatgatatccaattggttcttcgtatttgtcccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatc |
118 |
Q |
| |
|
||||||||||||||||||||| | | | |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
45174527 |
atcagtcatgatatccaattgatgcaccacatttttcccaggaaacaatggcctcccagtaagcatttctgcaaa-tatgcatccaatgctccaaatatc |
45174625 |
T |
|
| Q |
119 |
aattccaggggtataccgcataagacaaggattataaattacatgcatatttcaatacatcaagt |
183 |
Q |
| |
|
||||||||| |||||| |||||||| | ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
45174626 |
aattccaggtgtatactgcataagaaagggaatataaattacatacatatttcaatacatcaagt |
45174690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 45181575 - 45181604
Alignment:
| Q |
165 |
atatttcaatacatcaagtgtagtcacctt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45181575 |
atatttcaatacatcaagtgtagtcacctt |
45181604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 29961525 - 29961651
Alignment:
| Q |
49 |
atttgtcccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatcaattccaggggtataccgcataagacaagg |
148 |
Q |
| |
|
|||| ||||||||||||||||| | ||| |||||| ||||||||| ||||||||||||| ||||||||||||| | || |||||| ||| |||||||| |
|
|
| T |
29961525 |
atttttcccaggaaacaatggcttgccactaagcatttctgcaaa-tatgcatccaatgctccaaatatcaatcgctggagtatactgcaaaagacaaga |
29961623 |
T |
|
| Q |
149 |
attataaattacatgcatatttcaatac |
176 |
Q |
| |
|
||| ||||||||| ||||||||||||| |
|
|
| T |
29961624 |
atttgaaattacatacatatttcaatac |
29961651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 30814788 - 30814718
Alignment:
| Q |
56 |
ccaggaaacaatggcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatcaattccagg |
127 |
Q |
| |
|
||||||||||||||| | || ||||||||||| |||||| ||||| |||||| |||| ||||||||| |||| |
|
|
| T |
30814788 |
ccaggaaacaatggctttcctgtaagcacttccgcaaaa-atgcaaccaatgctccatatatcaattgcagg |
30814718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University