View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20426_low_3 (Length: 396)
Name: NF20426_low_3
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20426_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 14928264 - 14927883
Alignment:
| Q |
1 |
ctgcagtggaacgcttgagaatgtttgaagtgagattgaaaagcgattccacatcgtacctttcaccggtgtggacgtgagttaggtaaacggtttcgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14928264 |
ctgcagtggaacgcttgagaatgtttgaagtgagattgaaaagcgattccacatcgtacctttcaccggtgtggacgtgagttaggtaaacggtttcaag |
14928165 |
T |
|
| Q |
101 |
gatcttatcatcactccatgctaatgggtttgaagtttttgcttgttggctataagctgacacattacttgcaagtgaagatggcgccattgaagacgac |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14928164 |
gatcttatcatcactccatgccaatgggtttgaagttcttgcttgttggctataagctgacacattacttacaagtgaagatggcgccattgaagacgac |
14928065 |
T |
|
| Q |
201 |
atgttaggccaagaaagttattatatctctctttggagctactatggctttgttgcaaatgatgtcttgttcttttgttgcttgccctatttataaggtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14928064 |
atgttaggccaagaaagttattatatctctctttggagctactatggttttgttgcaagtgatgttttgttcttttgttgcttgccctatttataaggtt |
14927965 |
T |
|
| Q |
301 |
gagaatagataacagtttacacttaatttgtatgacaagttttcgaaagagatactataaaaagaaggtgatgaaatacatg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14927964 |
gagaatagataacagtttacacttaatttgtatgacaagttttcgaaagagatactataaaaagaaggtgatgaaatacatg |
14927883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University