View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20426_low_4 (Length: 368)
Name: NF20426_low_4
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20426_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 109 - 363
Target Start/End: Original strand, 31407577 - 31407831
Alignment:
| Q |
109 |
attgtataataattatgagataaggggaaaatataagaattttataaaggtcctctaaggctgttagttaaagagaggaataagtctgaaaaactgttta |
208 |
Q |
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| T |
31407577 |
attgtataataattatgagataaggggaaaatataagaattttataaaggtcctctaaggctgtcagttaaatagaggaataagtctgaaaaactgttta |
31407676 |
T |
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| Q |
209 |
gaagctaagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407677 |
gaagctaagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttc |
31407776 |
T |
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| Q |
309 |
aactgctcccttctcgtaacatataactgatcgagttctacatcgttcatctcac |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31407777 |
aactgctcccttctcgtaacatataactgatcgagttctacatcgttcatatcac |
31407831 |
T |
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Back To:
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 38493163 - 38493058
Alignment:
| Q |
215 |
aagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttcaactgc |
314 |
Q |
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||||||||||| |||||| || ||||| || |||||||||| || || |||||||||||||||||| ||||||||| | |||||||||||| | || | |
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| T |
38493163 |
aagtacctgcttcaggaaggaaacaaactctttcccatttagagattttccttgtacaatctttggacggattatactagaaacaagctcttttagcttc |
38493064 |
T |
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| Q |
315 |
tccctt |
320 |
Q |
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|||||| |
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| T |
38493063 |
tccctt |
38493058 |
T |
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