View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20426_low_5 (Length: 336)

Name: NF20426_low_5
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20426_low_5
NF20426_low_5
[»] chr1 (4 HSPs)
chr1 (149-325)||(4253566-4253741)
chr1 (72-107)||(4253777-4253812)
chr1 (150-187)||(22346707-22346744)
chr1 (151-187)||(37050960-37050996)
[»] chr7 (3 HSPs)
chr7 (149-188)||(41029302-41029341)
chr7 (149-183)||(8290461-8290495)
chr7 (149-182)||(30650221-30650254)
[»] chr5 (1 HSPs)
chr5 (149-188)||(781893-781932)
[»] scaffold0154 (1 HSPs)
scaffold0154 (157-187)||(37566-37596)
[»] chr8 (3 HSPs)
chr8 (149-187)||(2554204-2554242)
chr8 (149-187)||(39076551-39076589)
chr8 (149-187)||(39077037-39077075)
[»] chr3 (3 HSPs)
chr3 (149-187)||(52456512-52456550)
chr3 (149-187)||(52575978-52576016)
chr3 (159-188)||(38894067-38894096)
[»] chr2 (1 HSPs)
chr2 (149-187)||(42061416-42061454)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 4253741 - 4253566
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttatatgcagatcaattaagttaagctcacaaggatcaatatctaattcaacatccaannnnnnn 248  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||  |||| |||||| |||  ||||||||||||||||||||||||||||           
T  4253741 ggtggtcagg-ttcgaaccccggaccttgcatattttatatccagacaaattgagttaacctcggaaggatcaatatctaattcaacatccaattttttt 4253643  T
Q  249 cgttgagcaaataattcaacttaaggtatgaatttattaaagaaaacatataaggtatggatttattaatctctttt 325  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4253642 cgttgagcaaataattcaacttaaggtatgaatttattaaaaaaaacatataaggtatggatttattaatctctttt 4253566  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 4253812 - 4253777
Alignment:
Q  72 gacaagttttcttaaaaaatgttattaattgttatt 107  Q
    ||||||||||||||||||||||||||||||||||||    
T  4253812 gacaagttttcttaaaaaatgttattaattgttatt 4253777  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 22346744 - 22346707
Alignment:
Q  150 gtggtcaggattcgaaccccggaccttgcatattttat 187  Q
    |||||||||||| |||||||||||||||||||||||||    
T  22346744 gtggtcaggatttgaaccccggaccttgcatattttat 22346707  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 37050996 - 37050960
Alignment:
Q  151 tggtcaggattcgaaccccggaccttgcatattttat 187  Q
    ||||| || ||||||||||||||||||||||||||||    
T  37050996 tggtcggggttcgaaccccggaccttgcatattttat 37050960  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 41029341 - 41029302
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttata 188  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  41029341 ggtggtcgggattcgaaccccggaccttgcatatattata 41029302  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 8290461 - 8290495
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatatt 183  Q
    ||||||| |||||||||||||||||||||||||||    
T  8290461 ggtggtcgggattcgaaccccggaccttgcatatt 8290495  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 30650221 - 30650254
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatat 182  Q
    |||||||| |||||||||||||||||||||||||    
T  30650221 ggtggtcatgattcgaaccccggaccttgcatat 30650254  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 781932 - 781893
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttata 188  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  781932 ggtggtcagggttcgaaccccagaccttgcatattttata 781893  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 37596 - 37566
Alignment:
Q  157 ggattcgaaccccggaccttgcatattttat 187  Q
    |||||||||||||||||||||||||||||||    
T  37596 ggattcgaaccccggaccttgcatattttat 37566  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 2554204 - 2554242
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttat 187  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  2554204 ggtggccaggattcgaaccccagaccttgcatattttat 2554242  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 39076589 - 39076551
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttat 187  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  39076589 ggtgatcagggttcgaaccccggaccttgcatattttat 39076551  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 39077075 - 39077037
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttat 187  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  39077075 ggtgatcagggttcgaaccccggaccttgcatattttat 39077037  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 52456550 - 52456512
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttat 187  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  52456550 ggtggtcagggttcgaaccccggaccttacatattttat 52456512  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 52576016 - 52575978
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttat 187  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  52576016 ggtggtcgggattcgaaccccagaccttgcatattttat 52575978  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 38894096 - 38894067
Alignment:
Q  159 attcgaaccccggaccttgcatattttata 188  Q
    ||||||||||||||||||||||||||||||    
T  38894096 attcgaaccccggaccttgcatattttata 38894067  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 42061454 - 42061416
Alignment:
Q  149 ggtggtcaggattcgaaccccggaccttgcatattttat 187  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  42061454 ggtggtcagggttcgaaccctggaccttgcatattttat 42061416  T

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