View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20426_low_6 (Length: 335)

Name: NF20426_low_6
Description: NF20426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20426_low_6
NF20426_low_6
[»] chr8 (1 HSPs)
chr8 (13-323)||(13308118-13308450)
[»] chr2 (1 HSPs)
chr2 (27-217)||(15072945-15073135)
[»] chr7 (11 HSPs)
chr7 (20-231)||(18949760-18949970)
chr7 (20-231)||(19004084-19004294)
chr7 (119-302)||(19003997-19004197)
chr7 (126-235)||(18950323-18950432)
chr7 (155-235)||(15868208-15868288)
chr7 (258-302)||(18949673-18949717)
chr7 (17-57)||(18950215-18950255)
chr7 (17-57)||(19004539-19004579)
chr7 (119-234)||(15867962-15868077)
chr7 (126-235)||(19004647-19004756)
chr7 (258-302)||(18976245-18976289)
[»] chr4 (7 HSPs)
chr4 (86-235)||(10986819-10986968)
chr4 (227-295)||(10986743-10986811)
chr4 (88-223)||(9895144-9895279)
chr4 (86-235)||(11095834-11095983)
chr4 (86-234)||(11106530-11106678)
chr4 (227-295)||(11095758-11095826)
chr4 (235-275)||(11099911-11099951)
[»] chr3 (1 HSPs)
chr3 (36-235)||(29358117-29358316)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 13308450 - 13308118
Alignment:
Q  13 catcaccctttggttcatgaaagtctcttgattcatcattttcttgctttgttccatt------tcaggcatcatactaaattttgagagcacattttgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||| |||||||||||||||||||||    
T  13308450 catcaccctttggttcatgaaagtctcttgattcatcattttcttgctttgttccattaatatttcaggcatcatactgaattttgagagcacattttgg 13308351  T
Q  107 actccccaaggggatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13308350 actccccaaggggatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatct 13308251  T
Q  207 tcttcaataaacccttcatcctttt----------------cttgcagcgtcattgacaatgaaggcaagtttcacctttcttctagtcatggttgcgac 290  Q
    |||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13308250 tcttcaataaacccttcatccttttcttgtatgttacttttcttgcagcgtcattgacaatgaaggcaagtttcacctttcttctagtcatggttgcgac 13308151  T
Q  291 tagaataaaggagaacgaaaagtgaataatatt 323  Q
    |||||||||||||||||||||||||||||||||    
T  13308150 tagaataaaggagaacgaaaagtgaataatatt 13308118  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 15073135 - 15072945
Alignment:
Q  27 tcatgaaagtctcttgattcatcattttcttgctttgttccatttcaggcatcatactaaattttgagagcacattttggactccccaaggggatggcca 126  Q
    ||||||| |||||||| ||||||||||||||| | |  || | |||||||||  | || ||||||||||||||  | || |||||||| |  ||||||||    
T  15073135 tcatgaatgtctcttggttcatcattttcttgttcttctctaattcaggcatagtcctgaattttgagagcaccctatgaactccccatgatgatggcca 15073036  T
Q  127 aatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaa 217  Q
    ||| | |||||| ||||||| |||||| | |||||||||||| |||||||| |||||||||||||||||||| || | |||||||||||||    
T  15073035 aatatgaggttgaggttcatgaggaccttgaactatagcacatgcttcaataccacaaagcgtgcttagttcatcgaccttcttcaataaa 15072945  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 18949970 - 18949760
Alignment:
Q  20 ctttggttcatgaaagtctcttgattcatcattttcttgctttgttccatttcaggcatcatactaaattttgagagcacattttggactccccaagggg 119  Q
    ||||| |||||||||||||||||||||  |||||||||||| |  |||| |||| | ||  | ||  |||||||||||||  |||| | ||||   || |    
T  18949970 ctttgtttcatgaaagtctcttgattcgccattttcttgctcttctccaattcatgtatagtcctggattttgagagcac--tttgaaatccctttggtg 18949873  T
Q  120 atggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatc-ttcttcaataaac 218  Q
    |||||||||||||| |||||||||||||||| || || | ||||||||||||||||||||||||||| ||||||||||| |||| | || ||||||||||    
T  18949872 atggccaaatctcaagttgtggttcataagggccatacattatagcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaataaac 18949773  T
Q  219 ccttcatcctttt 231  Q
     |||| |||||||    
T  18949772 tcttcttcctttt 18949760  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 19004294 - 19004084
Alignment:
Q  20 ctttggttcatgaaagtctcttgattcatcattttcttgctttgttccatttcaggcatcatactaaattttgagagcacattttggactccccaagggg 119  Q
    ||||| |||||||||||||||||||||  |||||||||||| |  ||||  ||| |  |  | ||  |||||||| ||||  |||| ||||||   || |    
T  19004294 ctttgtttcatgaaagtctcttgattcgccattttcttgctcttctccaactcatgtgtagtcctggattttgagtgcac--tttgaactccctttggtg 19004197  T
Q  120 atggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatc-ttcttcaataaac 218  Q
    |||||||||||||| |||||||||||||||| || || | ||||||||||||||||||||||||||| ||||||||||| |||| | || ||||||||||    
T  19004196 atggccaaatctcaagttgtggttcataagggccatacattatagcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaataaac 19004097  T
Q  219 ccttcatcctttt 231  Q
     |||| |||||||    
T  19004096 tcttcttcctttt 19004084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 119 - 302
Target Start/End: Complemental strand, 19004197 - 19003997
Alignment:
Q  119 gatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttc-ttcaataaa 217  Q
    ||||||||||||||| |||||||||||||||| || || | ||||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||    
T  19004197 gatggccaaatctcaagttgtggttcataagggccatacattatagcacaagcttcaattccacaaagggtgcttagttcatcaaactttattcaataaa 19004098  T
Q  218 cccttcatccttttcttgca----------------gcgtcattgacaatgaaggcaagtttcacctttcttctagtcatggttgcgactagaataaagg 301  Q
    | |||| ||||||| ||| |                || ||||| ||| |  ||| ||||||||||||| ||||||||||| ||| ||||||||||||||    
T  19004097 ctcttcttcctttttttgtatgttgcttttatactagcatcatttacattagaggaaagtttcaccttttttctagtcatgattgtgactagaataaagg 19003998  T
Q  302 a 302  Q
    |    
T  19003997 a 19003997  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 18950323 - 18950432
Alignment:
Q  126 aaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaacccttcat 225  Q
    |||||| ||||| |||||||||| |  | ||||||||||| | | ||||||||| ||||||  |||||||||| |||| ||| ||||| | ||||||| |    
T  18950323 aaatctaaggttatggttcataatggtcctaaactatagctctaacttcaattctacaaaggatgcttagttcttcaaccttattcaacatacccttctt 18950422  T
Q  226 ccttttcttg 235  Q
    | ||||||||    
T  18950423 cgttttcttg 18950432  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 15868288 - 15868208
Alignment:
Q  155 taaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaacccttcatccttttcttg 235  Q
    ||||||||| |||||||||||||| | ||||| ||||||| ||| | || ||||||||||| | | ||| |||||||||||    
T  15868288 taaactatatcacaagcttcaatttcgcaaagggtgcttatttcattaaccttcttcaatatatcgttcttccttttcttg 15868208  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 18949717 - 18949673
Alignment:
Q  258 aagtttcacctttcttctagtcatggttgcgactagaataaagga 302  Q
    ||||||||||||| ||||||||||| ||| |||||||||||||||    
T  18949717 aagtttcaccttttttctagtcatgattgtgactagaataaagga 18949673  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 18950215 - 18950255
Alignment:
Q  17 accctttggttcatgaaagtctcttgattcatcattttctt 57  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  18950215 accctttgtttcttgaaagtctcttgattcatcattttctt 18950255  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 19004539 - 19004579
Alignment:
Q  17 accctttggttcatgaaagtctcttgattcatcattttctt 57  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  19004539 accctttgtttcttgaaagtctcttgattcatcattttctt 19004579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 15867962 - 15868077
Alignment:
Q  119 gatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaac 218  Q
    |||||| |||||||||||| | |||||||||  || ||| |||||| |||| | ||||||||||||||  | |||| ||| | || | ||||||||| ||    
T  15867962 gatggctaaatctcaggttatagttcataagttccataacctatagtacaaacatcaattccacaaaggtttcttatttcattaaccctcttcaatagac 15868061  T
Q  219 ccttcatccttttctt 234  Q
    ||||  ||||||||||    
T  15868062 ccttattccttttctt 15868077  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 19004647 - 19004756
Alignment:
Q  126 aaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaacccttcat 225  Q
    |||||| ||||| |||||||||| |  | ||||||||||| | | ||||||||| ||||||  |||||||||| |||| ||| ||||  | ||||||| |    
T  19004647 aaatctaaggttatggttcataatggtcctaaactatagctctaacttcaattctacaaaggatgcttagttcttcaaccttattcagcagacccttctt 19004746  T
Q  226 ccttttcttg 235  Q
    | ||||||||    
T  19004747 cgttttcttg 19004756  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 18976289 - 18976245
Alignment:
Q  258 aagtttcacctttcttctagtcatggttgcgactagaataaagga 302  Q
    ||||||||||||| ||||||||||| |||  ||||||||||||||    
T  18976289 aagtttcaccttttttctagtcatgattgttactagaataaagga 18976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 10986968 - 10986819
Alignment:
Q  86 aattttgagagcacattttggactccccaaggggatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaa 185  Q
    |||||||||||||||  |||||| ||    || ||||||||||||||||||||  | |||||||| || ||||| || ||||| || || ||||||||||    
T  10986968 aattttgagagcacagattggaccccttctggtgatggccaaatctcaggttgaagctcataagggccataaaccatggcacatgcatcgattccacaaa 10986869  T
Q  186 gcgtgcttagttcgtcaatcttcttcaataaacccttcatccttttcttg 235  Q
    | ||||| |||||  ||| ||| ||||||| ||||||| | |||||||||    
T  10986868 gggtgctaagttcagcaacctttttcaatagacccttctttcttttcttg 10986819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 10986811 - 10986743
Alignment:
Q  227 cttttcttgcagcgtcattgacaatgaaggcaagtttcacctttcttctagtcatggttgcgactagaa 295  Q
    |||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||||    
T  10986811 ctttccttgcagcatcattcacaatgaaggcaagtttaacttttcttctagtcatggttgtgacaagaa 10986743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 9895144 - 9895279
Alignment:
Q  88 ttttgagagcacattttggactccccaaggggatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagc 187  Q
    ||||||||||||  |||||||||||   || |||||||| ||||  ||||| || ||||| || || || || || ||||||||||||| |||||| ||     
T  9895144 ttttgagagcactgtttggactccctgtggtgatggccagatcttcggttgaggctcatatggtccatagacaatggcacaagcttcaactccacataga 9895243  T
Q  188 gtgcttagttcgtcaatcttcttcaataaacccttc 223  Q
    ||||||||||| | || |||||| ||||||||||||    
T  9895244 gtgcttagttcataaaccttcttgaataaacccttc 9895279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 11095983 - 11095834
Alignment:
Q  86 aattttgagagcacattttggactccccaaggggatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaa 185  Q
    |||||||||||||||  |||||| ||    || ||||||||||||||||| || || |||||||| || || ||||| |||||||| ||||| ||||| |    
T  11095983 aattttgagagcacagattggacaccttctggtgatggccaaatctcaggatgaggctcataagggccatacactatggcacaagcctcaataccacaga 11095884  T
Q  186 gcgtgcttagttcgtcaatcttcttcaataaacccttcatccttttcttg 235  Q
    | ||||| |||||  ||| ||| || || | || |||| |||||||||||    
T  11095883 gggtgctaagttcaacaacctttttgaacagactcttcttccttttcttg 11095834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 11106678 - 11106530
Alignment:
Q  86 aattttgagagcacattttggactccccaaggggatggccaaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaa 185  Q
    |||||||||||||||  |||||| ||    || ||||||||||||||||| || || |||||||| || || | ||| |||||||| ||||| ||||| |    
T  11106678 aattttgagagcacagattggaccccttctggtgatggccaaatctcaggatgaggctcataagggccatacaatatggcacaagcctcaataccacaga 11106579  T
Q  186 gcgtgcttagttcgtcaatcttcttcaataaacccttcatccttttctt 234  Q
    | ||||| |||||  ||| ||| || |||| || |||| ||||||||||    
T  11106578 gggtgctaagttcaacaacctttttgaatagactcttcttccttttctt 11106530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 11095826 - 11095758
Alignment:
Q  227 cttttcttgcagcgtcattgacaatgaaggcaagtttcacctttcttctagtcatggttgcgactagaa 295  Q
    |||| |||||||| || |||||||||||||||||||| |||||  |||||  |||||||| ||| ||||    
T  11095826 ctttccttgcagcatcgttgacaatgaaggcaagtttaaccttagttctaaccatggttgtgacaagaa 11095758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 11099951 - 11099911
Alignment:
Q  235 gcagcgtcattgacaatgaaggcaagtttcacctttcttct 275  Q
    ||||| ||||||||||||||||||||||| ||||| |||||    
T  11099951 gcagcatcattgacaatgaaggcaagtttaaccttacttct 11099911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 29358117 - 29358316
Alignment:
Q  36 tctcttgattcatcattttcttgctttgttccatttcaggcatcatactaaattttgagagcacattttggactccccaaggggatggccaaatctcagg 135  Q
    ||||||| |||| ||| || ||||||||||||| |||||||||  | |  || ||||| |||||  ||||||||||  |||| |||||||||| ||||||    
T  29358117 tctcttggttcaccatctttttgctttgttccaattcaggcatttttcggaactttgatagcaccctttggactcctaaaggagatggccaaacctcagg 29358216  T
Q  136 ttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaacccttcatccttttcttg 235  Q
    ||| || || || ||||  || | |||||||||||| ||||| ||||| || ||||| |||||   || ||| |||| || ||| ||| |||||||||||    
T  29358217 ttgaggatcgtatggactatagattatagcacaagcatcaataccacagagggtgctgagttcactaacctttttcattagacctttcttccttttcttg 29358316  T

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