View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20427_high_2 (Length: 568)
Name: NF20427_high_2
Description: NF20427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20427_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 3 - 553
Target Start/End: Original strand, 30668609 - 30669157
Alignment:
| Q |
3 |
gtgggtagataattctgaatatcgcaagggctatcaagttcatcccgatatatttttggggaatttttgggtannnnnnnn--acttctatatgtcaact |
100 |
Q |
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| T |
30668609 |
gtgggaagctaattctgaatatcgcaagggctatcaagttcatcccgatatatttttggggaattttcgggtatattttttttacttctatatgtcaact |
30668708 |
T |
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| Q |
101 |
tgcattgcatcctccctgtgatctgatatcctttactttctattttcactaaccagggttttttccacgatgaattaaactagttaaatttttatcatac |
200 |
Q |
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| T |
30668709 |
tgtattgcatcctccctgtgatctgatatcctttactttctattttcactaaccagggttttttccacgatgaattaaactagttaaact-----catat |
30668803 |
T |
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| Q |
201 |
gtcgatgttgttcaatggattaa-ttgtaatagatgtaacaatggaataagccattttcaaaatgtcaagcaactcgaagatctaaaatgctttaaatat |
299 |
Q |
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| T |
30668804 |
gtcgattttgttcaatggattaaattgtaatagatgtaacaatggaataagccattttcaaaatgtcaaacaactcgaagatctaaaatgctttaaatat |
30668903 |
T |
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| Q |
300 |
ttacaacaacaaaaatgattgtttcataaaatgaaaggccagtgtagttattttccatttgatgaaaacagatcctctatggtgtggtggctgtaccggt |
399 |
Q |
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| T |
30668904 |
ttacgacaacaaaaataattgtttcataaaatgaaaggccagtgtagttattttccatttgatgaaaacagatcctctatggtgtggtggctgtaccagt |
30669003 |
T |
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| Q |
400 |
gcagcagcctcagaggatccagtgtcccccttttgatgttttgctagtcttgtattgtttatacgaaaactcaagcannnnnnnccaaagaaaaattcat |
499 |
Q |
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| T |
30669004 |
gcagcagcctcagaggatctggtgtcctccttttgatgttttgctagtcttgtattgtttatacgaaaactcaagcatttttttccaaagaaaaattcat |
30669103 |
T |
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| Q |
500 |
ttaatatatagaagtcttttatacagaaaatattgatttgaagataggtaattg |
553 |
Q |
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| T |
30669104 |
ttaatatatagaagtcttttatacagaaaatattgatttgaagatagttaattg |
30669157 |
T |
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