View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20427_high_4 (Length: 411)
Name: NF20427_high_4
Description: NF20427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20427_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 27977905 - 27977527
Alignment:
| Q |
21 |
ttggagttaaagaagtgtgttttggaagcaaatcaatg-tattaattgtgtaagacatgnnnnnnntcataaaagtaagctggttattatattcatgaga |
119 |
Q |
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| T |
27977905 |
ttggagttaaagaagtgtgttttggaagcaaatcaatggtattaattgtgtaagacatgaaaaaaatcataaaagtaagctggttattatattcatgaga |
27977806 |
T |
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| Q |
120 |
aaaaaacatttcaaaattgacttgaaatcaagagnnnnnnnnncatttactttctgaatatatgaacacattaaacacaaatacatggattttaaagatg |
219 |
Q |
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| T |
27977805 |
aaaaaacatttcaaaattgacttgaaatcaagagagaaaaaa-catttgctttctgaatatatgaacacattaaacacaaatacatggattttaaagatg |
27977707 |
T |
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| Q |
220 |
caagaattatagaagaaaattcaaccttgaaattagaaataccataataacattcatgttctatatattgtcacataatcacactacaatatccttaaca |
319 |
Q |
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| T |
27977706 |
caagaattatagaagaaaatccaaccttgaaattagaaataccataataacattcatgttctatatattgtcacacaatcacactacaatatccttaaca |
27977607 |
T |
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| Q |
320 |
attttccaagtactcaaataaaggaaatcaaatttgctctctctctattggagctggtgcttgctcattgatactatttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27977606 |
attttccaagtactcaaataaaggaaatcaaatttgctctctctctattggagctggtacttgctcattgatactatttt |
27977527 |
T |
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