View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20427_low_1 (Length: 606)
Name: NF20427_low_1
Description: NF20427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20427_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 21 - 594
Target Start/End: Complemental strand, 27977905 - 27977332
Alignment:
| Q |
21 |
ttggagttaaagaagtgtgttttggaagcaaatcaatg-tattaattgtgtaagacatgnnnnnnntcataaaagtaagctggttattatattcatgaga |
119 |
Q |
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| T |
27977905 |
ttggagttaaagaagtgtgttttggaagcaaatcaatggtattaattgtgtaagacatgaaaaaaatcataaaagtaagctggttattatattcatgaga |
27977806 |
T |
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| Q |
120 |
aaaaaacatttcaaaattgacttgaaatcaagagnnnnnnnnncatttactttctgaatatatgaacacattaaacacaaatacatggattttaaagatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27977805 |
aaaaaacatttcaaaattgacttgaaatcaagagagaaaaaa-catttgctttctgaatatatgaacacattaaacacaaatacatggattttaaagatg |
27977707 |
T |
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| Q |
220 |
caagaattatagaagaaaattcaaccttgaaattagaaataccataataacattcatgttctatatattgtcacataatcacactacaatatccttaaca |
319 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27977706 |
caagaattatagaagaaaatccaaccttgaaattagaaataccataataacattcatgttctatatattgtcacacaatcacactacaatatccttaaca |
27977607 |
T |
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| Q |
320 |
attttccaagtactcaaataaaggaaatcaaatttgctctctctctattggagctggtgcttgctcattgatactattttgtttagacagtgtaggattg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27977606 |
attttccaagtactcaaataaaggaaatcaaatttgctctctctctattggagctggtacttgctcattgatactattttgtttagacagtgtaggattg |
27977507 |
T |
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| Q |
420 |
acacatgaaaacagtgattgatactgtttttgtctctttaacttgacaccaaacaagaaagacctcaaaggtattctattaccttttgtgttcttttttg |
519 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27977506 |
acacatgaaaacagtgattgatactgcttttgtctctttaacttgacaccaaacaagaaagacctcaaaggtattctattaccttttgtgttcttttttg |
27977407 |
T |
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| Q |
520 |
tctctctatgaacactactaatcccaatagcttgatcaagttcatcaagtgtcttctcaacatcatttttcattc |
594 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27977406 |
tctctctatgagcactgctaatcccaatagcttgatcaagttcatcaagtgtcttctcaacatcatttttcattc |
27977332 |
T |
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