View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20427_low_5 (Length: 318)
Name: NF20427_low_5
Description: NF20427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20427_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 25089380 - 25089068
Alignment:
| Q |
1 |
catttgttaccactttcttctctgattcattcataacaatcttcttttctggttcattcacatcaaccttatcattttcttgttgattctcaataacaac |
100 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25089380 |
cattggttaccactttcttctctgattcattcaaaacaatcttcttttctggttcattcacatcaaccttatcattttcttgttgattctcaataacaac |
25089281 |
T |
|
| Q |
101 |
tttggattctggaatacta---atttccttcacatcaaaacactcattctccatctcaatctcaatttcctcatcatccacaacatcaccatctgattca |
197 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25089280 |
tttggattctggaatactactaatttccttcacatcaaaactctcattctccatctcaatctcaatttcctcatcatccacaacatcaccatctgattca |
25089181 |
T |
|
| Q |
198 |
gaatcaccaccaacacgaaccactgattcaggtgaattttgaaccacaccaaaattgcttgatatctctttctcttgacacacatcaaaatcctcaacat |
297 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25089180 |
gaatcaccaccaacacgaaccaccgattcaggtgaattttgaaccacacaaacattgcttgatatctctttctcttgacacacatcaaaatcctcaacat |
25089081 |
T |
|
| Q |
298 |
tttcatctctctc |
310 |
Q |
| |
|
|||||||| |||| |
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| T |
25089080 |
tttcatctttctc |
25089068 |
T |
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