View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20427_low_6 (Length: 225)
Name: NF20427_low_6
Description: NF20427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20427_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 52387196 - 52387289
Alignment:
| Q |
115 |
atgtaaagatttgtttgattgaatgtgcataagtaatctttacaaagaggataatgcttaatccaacaaaaagtaaacatcacgaacaacaattt |
209 |
Q |
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| T |
52387196 |
atgtaaagatttgtttgattgaatgtgcataagtaatctttacaaagaggataatgcttaatccaac-aaaagtaagcatcacgaacaacaattt |
52387289 |
T |
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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 52387080 - 52387153
Alignment:
| Q |
33 |
ctgacaatgatattcaattttattatcaaacaattatgatgagaaaaagtttttcctttctcaactgtgcattt |
106 |
Q |
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| T |
52387080 |
ctgagaatgatattctattttattatcaaacaattatgatgagaaaaagtttttcctttctcaactgtgcattt |
52387153 |
T |
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