View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20428_high_1_N (Length: 572)
Name: NF20428_high_1_N
Description: NF20428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20428_high_1_N |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 572
Target Start/End: Complemental strand, 14929347 - 14928791
Alignment:
| Q |
8 |
agattattctggccaactagttgatatctagtatctacatgttaaagtcagtagggtgggtctcatgcataagacgctgcttcttcttaggagtttcgtg |
107 |
Q |
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| T |
14929347 |
agattattttggccaactagttgatatctagtatctacatgttaaagtcagtagggtgggtctcatgcgtaagacgctgcttcttcttaggagtttcgtg |
14929248 |
T |
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| Q |
108 |
cacttgtgcttcccttccaaatgtcttgagttgagtggagtagcaaaggcagcagaaacagcttccacctatgattatgtnnnnnnngtgtagtagcata |
207 |
Q |
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| T |
14929247 |
cacttgtgcttcccttccaaatgtcttgagctgata--atttgcaaaggcagcagaaacagcttccacctatgattatgtaaaaaaaatc-agt-gcatg |
14929152 |
T |
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| Q |
208 |
ggcatagtgtgcatatattcaaaatttccaaattatgaaaatacttttttggttgttgtttctttgtcactaaccagttcaggcttcttgctgtacactc |
307 |
Q |
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| T |
14929151 |
ggcatagtgtgcatatattcaaaatttccaaattatgaaaatacttttttggttgttgtttctttgtcactaaccagttcaggcttcttgctgtacactc |
14929052 |
T |
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| Q |
308 |
tcactatgatgtcttcgtagaatgctggcaacaaatgactgattcgctcattttcgattggaaatttttctttactcccgtagtcctgacgcaataatat |
407 |
Q |
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| T |
14929051 |
tcactatgatgtcttcgtagaatgctggcaacaaatgactgattcgctcattttcgattggaaatttttctttactcccgtagtcctgacacaataatat |
14928952 |
T |
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| Q |
408 |
aatgcagttgaactctcagtcatgtaaactatatgcaacaagaaaactaaataattttgggaaacaacaattgaacaatcataaaaggtagaagccataa |
507 |
Q |
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| T |
14928951 |
aatgcagttgaactctcagtcatgtaaactat----aacaagaaaactaaataattttgggaaacaataattgaacaatcataaaaggtagaagccataa |
14928856 |
T |
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| Q |
508 |
agatgtatttgactaatttggaatatgatgacttgatgacagctatttcaagaaggcaaattggt |
572 |
Q |
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| T |
14928855 |
agatgtatttgactaatttggaatatgatgacttgatgacagctatttcaagaaggcaaattggt |
14928791 |
T |
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