View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20428_low_1 (Length: 461)

Name: NF20428_low_1
Description: NF20428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20428_low_1
NF20428_low_1
[»] chr5 (8 HSPs)
chr5 (17-447)||(19850572-19851003)
chr5 (232-447)||(38981847-38982063)
chr5 (216-436)||(27342954-27343170)
chr5 (173-227)||(38982344-38982398)
chr5 (175-222)||(27343341-27343388)
chr5 (235-321)||(458673-458758)
chr5 (173-222)||(458931-458980)
chr5 (390-437)||(17244715-17244762)
[»] chr3 (3 HSPs)
chr3 (180-447)||(45279541-45279809)
chr3 (175-447)||(35850935-35851203)
chr3 (391-436)||(10687890-10687935)
[»] chr4 (5 HSPs)
chr4 (173-296)||(17871951-17872074)
chr4 (300-447)||(17872230-17872377)
chr4 (217-365)||(33610220-33610372)
chr4 (175-222)||(24368210-24368257)
chr4 (391-437)||(22335681-22335727)
[»] chr2 (1 HSPs)
chr2 (241-365)||(947303-947425)
[»] scaffold1920 (1 HSPs)
scaffold1920 (393-422)||(1016-1045)
[»] chr7 (1 HSPs)
chr7 (402-435)||(33323139-33323172)
[»] chr1 (2 HSPs)
chr1 (410-447)||(25267203-25267240)
chr1 (88-133)||(39570053-39570098)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 19851003 - 19850572
Alignment:
Q  17 accttgtgtgttatgctctaattaagagcaaaaatatcttcacaagtacgaaaattatcactttgagttaaagaagttatggtgaaacttgtagagctgc 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19851003 accttgtgtgttatgctctaattgagagcaaaaatatcttcacaagtacgaaaattatcactttgagttaaagaagttatggtgaaacttgtagagctgc 19850904  T
Q  117 ctaaaaattataaggtagttagaggcaatttcttcaaaagggatgaagccattctgatcagtgacggacccagaaattttaagtagtgtcggccacataa 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  19850903 ctaaaaattataaggtagttagaggcaatttcttcaagagggatgaagccattccgatcaatgacggacccagaaattttaagtagtgtcggccacataa 19850804  T
Q  217 atataagtaaacaaatatttaactattcatcttccatgtaattttgcatccaattctcgtaaatactcgtaataaag-aaactatttcattagttgcagt 315  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  19850803 atataagtaaacaaatatttaactattcatcttccatgcaattttgcatccaattctcgtaaatactcataataaagaaaactatttcattagttgcagt 19850704  T
Q  316 tgccatgctttctggtggaatatggtttgcaacttgggaattgagatatacaatatttggtttttagtttatgaaaaaattacatgattcgtctcttaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||| ||||||||     
T  19850703 tgccatgctttctggtggaatatggtttgcaacttgggaattgagatatacaatatttggtttttagtttatggaaaaattacatagttcatctcttaaa 19850604  T
Q  416 ttaattttagataacactttcgcccttcatct 447  Q
    ||||||||||||||||||||  ||||||||||    
T  19850603 ttaattttagataacacttttacccttcatct 19850572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 232 - 447
Target Start/End: Complemental strand, 38982063 - 38981847
Alignment:
Q  232 tatttaactattcatcttccatgtaattttgcatccaattctcgtaaatactcgtaataaagaaa-ctatttcattagttgcagttgccatgctttctgg 330  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||    
T  38982063 tatttaaccattcatcttccatgtaattttccatccaattttcgtaaatactcgtaataaagaaaactaattcattagttgcagttgtcatgttttctgg 38981964  T
Q  331 tggaatatggtttgcaacttgggaattgagatatacaatatttggtttttagtttatgaaaaaattacatgattcgtctcttaatttaattttagataac 430  Q
    ||||||  ||||||||| |||||||| |||||||||| |||||||||||||||||||   ||||||||||  ||| ||||||||||||||||||| ||||    
T  38981963 tggaatggggtttgcaatttgggaatcgagatatacactatttggtttttagtttattgtaaaattacatagttcatctcttaatttaattttaggtaac 38981864  T
Q  431 actttcgcccttcatct 447  Q
    ||||||| |||||||||    
T  38981863 actttcgtccttcatct 38981847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 216 - 436
Target Start/End: Complemental strand, 27343170 - 27342954
Alignment:
Q  216 aatataagtaaacaaatatttaactattcatcttccatgtaattttgcatccaattctcgtaaatactcgtaat-aaagaaactatttcattagttgcag 314  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| | |||| ||| ||| |||||||||||||||||    
T  27343170 aatataagtaaacaaatatttatcgattcatcttccatgcaattttgcatccaattctcgtaaatacacataataaaaaaaattatttcattagttgcag 27343071  T
Q  315 ttgccatgctttctggtggaatatggtttgcaacttgggaattgagatatacaatatttggtttttagtttatgaaaaaattacatgattcgtctcttaa 414  Q
    |||||||| |||  ||||||||  ||||||||| ||||||||||||||     |||||||||||||||||||||  |||||||||| |||  ||  ||||    
T  27343070 ttgccatgtttttcggtggaatgaggtttgcaatttgggaattgagat-----atatttggtttttagtttatggtaaaattacataatttttcctttaa 27342976  T
Q  415 tttaattttagataacactttc 436  Q
    |||||||| || || |||||||    
T  27342975 tttaatttcaggtaccactttc 27342954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 38982398 - 38982344
Alignment:
Q  173 atcagtgacggacccagaaattttaagtagtgtcggccacataaatataagtaaa 227  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  38982398 atcagtgacgggcccagaaattttaagtagtgtaggccacgtaaatataagtaaa 38982344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 27343388 - 27343341
Alignment:
Q  175 cagtgacggacccagaaattttaagtagtgtcggccacataaatataa 222  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  27343388 cagtgacggacccagaaattgtaagtagtgtaggccacataaatataa 27343341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 458758 - 458673
Alignment:
Q  235 ttaactattcatcttccatgtaattttgcatccaattctcgtaaatactcgtaataaagaaactatttcattagttgcagttgccat 321  Q
    |||| |||||||| |||||| |||||  ||||||||||| |||||||||| ||| |||  ||| ||||||||||||| |||||||||    
T  458758 ttaattattcatcatccatgcaatttcacatccaattcttgtaaatactcataacaaa-taaccatttcattagttgtagttgccat 458673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 458980 - 458931
Alignment:
Q  173 atcagtgacggacccagaaattttaagtagtgtcggccacataaatataa 222  Q
    |||||||||||||| || ||||||||||||||| ||||||| ||||||||    
T  458980 atcagtgacggaccgaggaattttaagtagtgtaggccacaaaaatataa 458931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 17244762 - 17244715
Alignment:
Q  390 aaaaattacatgattcgtctcttaatttaattttagataacactttcg 437  Q
    ||||||||||| |||  ||||||||||||||||||| |||||||||||    
T  17244762 aaaaattacataattgatctcttaatttaattttaggtaacactttcg 17244715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 180 - 447
Target Start/End: Complemental strand, 45279809 - 45279541
Alignment:
Q  180 acggacccagaaattttaagtagtgtcggccacataaatataagtaaacaaatatttaactattcatcttccatgtaattttgcatccaattctcgtaaa 279  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||||| || |||||||| || |||||||||| |||||||||||||||||||||||||    
T  45279809 acggacccaggaattttaagtagtgtaggccatataaatataagtaaataattatttaaccatccatcttccatataattttgcatccaattctcgtaaa 45279710  T
Q  280 tactcgtaataaagaaa-ctatttcattagttgcagttgccatgctttctggtggaatatggtttgcaacttgggaattgagatatacaatatttggttt 378  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||  ||  ||||| ||||||||||||||||||| ||||||||||    
T  45279709 tactcataataaagaaaactatttcattagttgcagttgccatgttttctggtggaatgaggcatgcaatttgggaattgagatatacactatttggttt 45279610  T
Q  379 ttagtttatgaaaaaattacatgattcgtctcttaatttaattttagataacactttcgcccttcatct 447  Q
    |||||||||   ||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||    
T  45279609 ttagtttattgtaaaattacatggttcatctcttaatttaattttaggtaacactttcgtccttcatct 45279541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 175 - 447
Target Start/End: Complemental strand, 35851203 - 35850935
Alignment:
Q  175 cagtgacggacccagaaattttaagtagtgtcggccacataaatataagtaaacaaatatttaactattcatcttccatgtaattttgcatccaattctc 274  Q
    |||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||    ||| ||||||| ||||||||||| |||||||    
T  35851203 cagtgacggacccaaaaaatttaagtagtgtaggcca-ataaatataagtaaacaaatatttaac----catattccatgcaattttgcatcgaattctc 35851109  T
Q  275 gtaaatactcgtaataaagaaa-ctatttcattagttgcagttgccatgctttctggtggaatatggtttgcaacttgggaattgagatatacaatattt 373  Q
    || |||||||| |||||||||| |||||| ||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  35851108 gttaatactcgcaataaagaaaactatttaattagttgcagttgccatgttttctcgtggaatagggtttgcaatttgggaattgagatatacaatattt 35851009  T
Q  374 ggtttttagtttatgaaaaaattacatgattcgtctcttaatttaattttagataacactttcgcccttcatct 447  Q
    |||||||||||||||  |||||||||| |||||||| ||||||||||||||| |||||||||||  ||||||||    
T  35851008 ggtttttagtttatggcaaaattacataattcgtcttttaatttaattttaggtaacactttcgttcttcatct 35850935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 10687935 - 10687890
Alignment:
Q  391 aaaattacatgattcgtctcttaatttaattttagataacactttc 436  Q
    |||||||||  ||||||||||||| |||||||||| ||||||||||    
T  10687935 aaaattacacaattcgtctcttaacttaattttaggtaacactttc 10687890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 17871951 - 17872074
Alignment:
Q  173 atcagtgacggacccagaaattttaagtagtgtcggccacataaatataagtaaacaaatatttaactattcatcttccatgtaattttgcatccaattc 272  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| || |||||||| ||| |||||| |||||||||||||||||||||    
T  17871951 atcagtgacagacccataaattttaagtagtgtaggccacataaatataagtaaataattatttaaccatttatcttctatgtaattttgcatccaattc 17872050  T
Q  273 tcgtaaatactcgtaataaagaaa 296  Q
    |||||||||| |||||||||||||    
T  17872051 tcgtaaatacccgtaataaagaaa 17872074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 300 - 447
Target Start/End: Original strand, 17872230 - 17872377
Alignment:
Q  300 tttcattagttgcagttgccatgctttctggtggaatatggtttgcaacttgggaattgagatatacaatatttggtttttagtttatgaaaaaattaca 399  Q
    ||||||||||||||||||||||| ||| |||| ||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||   |||||||||    
T  17872230 tttcattagttgcagttgccatgttttttggttgaatggggtttgcaatttgggaattgagatatacactatttggtttttagtttattgtaaaattaca 17872329  T
Q  400 tgattcgtctcttaatttaattttagataacactttcgcccttcatct 447  Q
    | |||| ||||||||||||||||| |  |||||||||| |||||||||    
T  17872330 taattcatctcttaatttaatttttggaaacactttcgtccttcatct 17872377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 365
Target Start/End: Complemental strand, 33610372 - 33610220
Alignment:
Q  217 atataagtaaacaaata----tttaactattcatcttccatgtaattttgcatccaattctcgtaaatactcgtaataaagaaa-ctatttcattagttg 311  Q
    |||||||||||||||||    ||| || ||||| |||| ||| |||||  |||||||||   |||||||||| |||  |||||| |||||||||||||||    
T  33610372 atataagtaaacaaataattgtttgaccattcagcttc-atgcaatttcacatccaatttctgtaaatactcataactaagaaaactatttcattagttg 33610274  T
Q  312 cagttgccatgctttctggtggaatatggtttgcaacttgggaattgagatata 365  Q
    || ||| |||| |||| | ||||||  ||||||||||||||||||  |||||||    
T  33610273 caattgtcatgttttccgatggaatggggtttgcaacttgggaatcaagatata 33610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 24368257 - 24368210
Alignment:
Q  175 cagtgacggacccagaaattttaagtagtgtcggccacataaatataa 222  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  24368257 cagtgacggactcagaaattttaagtagtgtaggccacaaaaatataa 24368210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 22335727 - 22335681
Alignment:
Q  391 aaaattacatgattcgtctcttaatttaattttagataacactttcg 437  Q
    ||||||||| ||||||||| ||||||||||||||| ||||| |||||    
T  22335727 aaaattacacgattcgtctattaatttaattttaggtaacaatttcg 22335681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 947425 - 947303
Alignment:
Q  241 attcatcttccatgtaattttgcatccaattctcgtaaatactcgtaataaagaaactatttcattagttgcagttgccatgctttctggtggaatatgg 340  Q
    |||||||||||||| |||||  ||||||||||| ||||||| || ||| |||  ||||||||||||||||| |||||||||| ||| |  | ||||  ||    
T  947425 attcatcttccatgcaatttcacatccaattcttgtaaatattcataacaaa-taactatttcattagttgtagttgccatgttttat-ctcgaatgggg 947328  T
Q  341 tttgcaacttgggaattgagatata 365  Q
    ||||||| ||| |||||||||||||    
T  947327 tttgcaatttgagaattgagatata 947303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1920 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1920
Description:

Target: scaffold1920; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 1016 - 1045
Alignment:
Q  393 aattacatgattcgtctcttaatttaattt 422  Q
    ||||||||||||||||||||||||||||||    
T  1016 aattacatgattcgtctcttaatttaattt 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 33323139 - 33323172
Alignment:
Q  402 attcgtctcttaatttaattttagataacacttt 435  Q
    ||||||||||||||||||||||| ||||||||||    
T  33323139 attcgtctcttaatttaattttaaataacacttt 33323172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Original strand, 25267203 - 25267240
Alignment:
Q  410 cttaatttaattttagataacactttcgcccttcatct 447  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  25267203 cttaatttaattttagataacactttcgtcctttatct 25267240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 39570098 - 39570053
Alignment:
Q  88 agaagttatggtgaaacttgtagagctgcctaaaaattataaggta 133  Q
    |||||| ||||||||||||||| ||||||||||||| | |||||||    
T  39570098 agaagtcatggtgaaacttgtaaagctgcctaaaaagtctaaggta 39570053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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