View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20428_low_2 (Length: 244)

Name: NF20428_low_2
Description: NF20428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20428_low_2
NF20428_low_2
[»] chr7 (6 HSPs)
chr7 (6-239)||(4246839-4247072)
chr7 (19-223)||(4251287-4251491)
chr7 (46-238)||(4189672-4189864)
chr7 (59-206)||(4192805-4192952)
chr7 (19-221)||(4234277-4234479)
chr7 (142-223)||(4210736-4210817)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 4246839 - 4247072
Alignment:
Q  6 agttcaaaattataaagagaagtttggttttgtgtttgctgtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4246839 agttcaaaattataaagagaagtttggttttgtgtttgctgtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatt 4246938  T
Q  106 tgggggcacttcattgatgcacaaccgctagattttataaaagaagatggtgtttctttagttgctaagagtatttatgagaaaataaagatgataaatg 205  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4246939 tgggggcatttcattgatgcacaaccgttagattttataaaagaagatggtgtttctttagttgctaaaagtatttatgagaaaataaagatgataaatg 4247038  T
Q  206 aaaagggttttcttgaagaggctattgatgatgt 239  Q
    ||||||||||||||||||||||||||||||||||    
T  4247039 aaaagggttttcttgaagaggctattgatgatgt 4247072  T

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Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 4251287 - 4251491
Alignment:
Q  19 aaagagaagtttggttttgtgtttgctgtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcacttca 118  Q
    ||||||||||||  |||||||||    |||||||| ||  |||||||| ||||| ||||| ||||||||||| ||||||||||| |||||| | | || |    
T  4251287 aaagagaagttttcttttgtgttcagcgtagattgcagagcaaggttagaaccaacaataccaaataactatcttggaaactgtgtttgggcgtatttta 4251386  T
Q  119 ttgatgcacaaccgctagattttataaaagaagatggtgtttctttagttgctaagagtatttatgagaaaataaagatgataaatgaaaagggttttct 218  Q
    ||||| |||| ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4251387 ttgatacacagccgttggattttataaaagaagatggtgtttttttagttgctaagagtatttatgagaaaataaagatgataaatgaaaagggttttct 4251486  T
Q  219 tgaag 223  Q
    |||||    
T  4251487 tgaag 4251491  T

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Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 4189672 - 4189864
Alignment:
Q  46 gtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcacttcattgatgcacaaccgctagattttataa 145  Q
    |||||||| ||  |||||||| ||||||||||| ||| ||||||| ||||||||||| |||||||| |||||||   | |||||||| | ||||| || |    
T  4189672 gtagattgcagagcaaggttagaaccaccaataccaagtaactattttggaaactgtgtttgggggaacttcatcagtacacaaccgttggatttcatta 4189771  T
Q  146 aagaagatggtgtttctttagttgctaagagtatttatgagaaaataaagatgataaatgaaaagggttttcttgaagaggctattgatgatg 238  Q
    || |||| |||||||  |||||||||||| ||||||| ||||||||||||||||||||||| || ||| ||||||||| ||||||| ||||||    
T  4189772 aaaaagacggtgttttcttagttgctaagtgtatttacgagaaaataaagatgataaatgagaacggtgttcttgaaggggctattaatgatg 4189864  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 4192805 - 4192952
Alignment:
Q  59 caaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcacttcattgatgcacaaccgctagattttataaaagaagatggtgt 158  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||| | |||||||| ||  ||||| || ||||     | |||||  ||||||||| |||    
T  4192805 caaggttagaaccaccaataccaaataactattttggaaactgtgtctgggggcattttgttgatacaaaaccatcgaactttatggaagaagatgatgt 4192904  T
Q  159 ttctttagttgctaagagtatttatgagaaaataaagatgataaatga 206  Q
    || ||||||||||||| ||||| |||||||||||||||||||||||||    
T  4192905 ttatttagttgctaagtgtattcatgagaaaataaagatgataaatga 4192952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 4234277 - 4234479
Alignment:
Q  19 aaagagaagtttggttttgtgtttgctgtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcacttca 118  Q
    |||||||||||||| ||||  ||  | |||||||| ||  |||||||| | |||||| || ||||||||||| ||||||||||  | ||||| || ||      
T  4234277 aaagagaagtttgggtttgcattcaccgtagattgcagagcaaggttagagccaccactaccaaataactattttggaaactgcgtatggggacatttag 4234376  T
Q  119 ttgatgcacaaccgctagattttataaaagaagatggtgtttctttagttgctaagagtatttatgagaaaataaagatgataaatgaaaagggttttct 218  Q
    ||||| || ||||  | ||||  ||||| |||||||| || | ||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||    
T  4234377 ttgatacaaaaccattggattacataaacgaagatggggtgtttttagttgctaagtgtattcatgaaaaaataaagatgataaatgaaaagggtgttct 4234476  T
Q  219 tga 221  Q
    |||    
T  4234477 tga 4234479  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 4210736 - 4210817
Alignment:
Q  142 ataaaagaagatggtgtttctttagttgctaagagtatttatgagaaaataaagatgataaatgaaaagggttttcttgaag 223  Q
    ||||| |||||||| || | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  4210736 ataaatgaagatggggtgtttttagttgctaagtgtattcatgagaaaataaagatgataaatgaaaagggtggtcttgaag 4210817  T

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