View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20429_high_12 (Length: 306)
Name: NF20429_high_12
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20429_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 9934180 - 9934465
Alignment:
| Q |
1 |
aggctttcaactcttgtttctcctcaactgaacctcgaaaaggctccgatattctcgttgaagcacttgagcgtcaaggcataaccaccgtcttcgctta |
100 |
Q |
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| T |
9934180 |
aggctttcaactcttgtttctcctcaactgaacctcgaaaaggctccgatattctcgttgaagcacttgagcgtcaaggcataaccaccgtcttcgctta |
9934279 |
T |
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| Q |
101 |
ccctggcggtgcttccgcagagatccaccaagctctaacccgctctaaaacaatccgaaacatacttccccgccacgaacaaggtggaatattcgcggct |
200 |
Q |
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| T |
9934280 |
ccctggcggtgcttccgcagagatccaccaagctctaacccgctccaaaacaattcgaaacatacttccccgccacgaacaaggtggaatattcgcggct |
9934379 |
T |
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| Q |
201 |
gagggttacgctcgctcctccagtatccctggtgtttgcatagccacctccggtccgggtgctactaacttaatcagtggcctcgc |
286 |
Q |
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| T |
9934380 |
gagggttacgctcgctcctccagtatccctggtgtttgcatagccacctccggtccgggtgctactaacttaatcagtggcctcgc |
9934465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 3471780 - 3471874
Alignment:
| Q |
174 |
cacgaacaaggtggaatattcgcggctgagggttacgctcgctcctccagtatccctggtgtttgcatagccacctccggtccgggtgctactaa |
268 |
Q |
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| T |
3471780 |
cacgaacaaggtggaatcttcgctgccgagggttacgctcgttcctctggtctacctggtgtctgcatcgccacttccggccctggtgccactaa |
3471874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 45476132 - 45476419
Alignment:
| Q |
4 |
ctttcaactcttgtttctcctcaactgaacctcgaaaaggctccgatattctcgttgaagcacttgagcgtcaaggcataaccaccgtcttcgcttaccc |
103 |
Q |
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|||||| |||| |||||||||| || |||| |||||||||||||| |||||||||||||| | || || ||||| | |||| ||||||||||||||| |
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| T |
45476132 |
ctttcacctctcgtttctcctccacccaaccccgaaaaggctccgacattctcgttgaagccttagaacgcgaaggcgttaccaacgtcttcgcttaccc |
45476231 |
T |
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| Q |
104 |
tggcggtgcttccgcagagatccaccaagctctaacccgctctaaaacaatccgaaacatacttccccgccacgaacaaggtggaatattcgcggctgag |
203 |
Q |
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|||||| |||||| ||||||||||||||||| ||||| || ||||| ||||| |||||||| ||||| |||||||||||||| | ||||| || || |
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| T |
45476232 |
tggcggcgcttccatggagatccaccaagctctcacccgttccaaaaccatccgtaacatactcccccgtcacgaacaaggtggtgtcttcgccgccgaa |
45476331 |
T |
|
| Q |
204 |
ggttacgctcgctcctccagtatccctggtgtttgcatagccacctccggtccgggtgctactaacttaatcagtggcctcgctgatg |
291 |
Q |
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|| ||||||||||||||| || | || || ||||| || |||||||| ||||| ||||| || |||||| |||| |||||||| |||| |
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| T |
45476332 |
ggctacgctcgctcctccggtcttcccggcgtttgtatcgccacctctggtcccggtgccaccaacttagtcagcggcctcgccgatg |
45476419 |
T |
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