View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20429_high_5 (Length: 563)
Name: NF20429_high_5
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20429_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 329 - 547
Target Start/End: Original strand, 42141833 - 42142047
Alignment:
| Q |
329 |
tgaattccttacttgagattacaacgttttgcagcaatgatctaattaagtcataatattcggcctatggagcatgaagaagcttccaagtgcattgtgt |
428 |
Q |
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| T |
42141833 |
tgaactccttacttgagattaccatgttttgcagcaatgatctaa----gtcataatattcggcctatagagcatgaagaagcttccaagtgcattgtct |
42141928 |
T |
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| Q |
429 |
gtcactagctttaaccctttgctaatttaaacagaagataagtttagagtggacaaaattattgttaacttattaattttcatagtgaaagaatagttca |
528 |
Q |
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| T |
42141929 |
gtcactagctttaaccctttgctaatttaaacagaagataagtttagagtggacaaaattattgttaacttattaattttcatagtgaaagaatagttca |
42142028 |
T |
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| Q |
529 |
atctttcaatgagacaagt |
547 |
Q |
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| T |
42142029 |
atctttgaatgagacaagt |
42142047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 42141452 - 42141631
Alignment:
| Q |
15 |
cataggctacggagaaaaagaaaatgggattgactatttgatttttt----gtttcattttattctcaaatatattttgatgggatagattagatgaatt |
110 |
Q |
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| T |
42141452 |
cataggctacggagaaaaagaaaatggg-ttgactatttgttttttttttcttttcattttattctcaaatctattttgatgggatggattggatgaatt |
42141550 |
T |
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| Q |
111 |
ggaatattttgaacgtaaagaattgatgatgatgttgtttttgtctgcaaagtttgataattgatagtgtaactttcaaca |
191 |
Q |
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| T |
42141551 |
ggaatattttgaacgcaaagaattgatgatgatgttgtttttgtctacaaagtttgataactgacggtgtaactttcaaca |
42141631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 185 - 333
Target Start/End: Original strand, 42141655 - 42141804
Alignment:
| Q |
185 |
ttcaacatattaatagttgttaatgattacatatatgaataaggttg-ttggtcacatgt-cttgaagtttttgtgttatgtatgtctagacaaaatagg |
282 |
Q |
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| T |
42141655 |
ttcaacatattaatagttgtta-tgattgcacatatgaataaggtaggttggtgtcattttctcaaagtttttgtgttatgtatgtctagacaaaatagg |
42141753 |
T |
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| Q |
283 |
aataaaataattgtagaagagaaaaactatttttagttaaatgacatgaat |
333 |
Q |
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| T |
42141754 |
aataaaataattggagaagagaaaaactatttttaattaaatgacatgaat |
42141804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 40885748 - 40885800
Alignment:
| Q |
56 |
ttttttgtttcattttattctcaaatatattttgatgggatagattagatgaa |
108 |
Q |
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| T |
40885748 |
ttttatgtttcattttattctcaaatacattttaataggattgatcagatgaa |
40885800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 25520224 - 25520163
Alignment:
| Q |
126 |
taaagaattgatgatgatgttgtttttgtctgcaaagtttgataattgatagtgtaactttc |
187 |
Q |
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| T |
25520224 |
taaagaattgatgatgatgttgtttttgtctgcaaagtttgataattgatagtgtacctttc |
25520163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 7052597 - 7052646
Alignment:
| Q |
141 |
gatgttgtttttgtctgcaaagtttgataattgatagtgtaactttcaac |
190 |
Q |
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| T |
7052597 |
gatgttgtttttgtcttcaaagtttgataaattatggggtaactttcaac |
7052646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 8550587 - 8550540
Alignment:
| Q |
270 |
tagacaaaataggaataaaataattgtagaagagaaaaactatttttagtt |
320 |
Q |
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| T |
8550587 |
tagacaaaataggattaaaataattg---aagagaaaaactatttttagtt |
8550540 |
T |
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