View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20429_high_6 (Length: 562)

Name: NF20429_high_6
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20429_high_6
NF20429_high_6
[»] chr4 (14 HSPs)
chr4 (265-546)||(30610451-30610744)
chr4 (15-160)||(30610153-30610298)
chr4 (20-96)||(3803176-3803255)
chr4 (101-153)||(25092813-25092865)
chr4 (103-151)||(48339754-48339802)
chr4 (46-157)||(35657458-35657578)
chr4 (103-154)||(52305849-52305900)
chr4 (103-153)||(35318331-35318381)
chr4 (48-154)||(35658065-35658178)
chr4 (312-364)||(47297038-47297090)
chr4 (102-157)||(33960517-33960572)
chr4 (46-96)||(35317720-35317770)
chr4 (104-145)||(29099485-29099526)
chr4 (105-156)||(26341486-26341538)
[»] chr6 (4 HSPs)
chr6 (46-157)||(1825440-1825555)
chr6 (268-331)||(12383425-12383488)
chr6 (260-296)||(5179253-5179289)
chr6 (260-296)||(5281067-5281103)
[»] chr7 (10 HSPs)
chr7 (46-153)||(11698062-11698175)
chr7 (27-74)||(8691961-8692008)
chr7 (103-154)||(35779267-35779318)
chr7 (103-157)||(11697380-11697434)
chr7 (103-157)||(47362743-47362797)
chr7 (103-152)||(47361193-47361242)
chr7 (103-152)||(47362084-47362133)
chr7 (46-94)||(47362678-47362729)
chr7 (116-152)||(287566-287602)
chr7 (105-156)||(37034843-37034895)
[»] chr2 (8 HSPs)
chr2 (46-156)||(3130042-3130158)
chr2 (102-157)||(43992364-43992419)
chr2 (46-96)||(17369469-17369519)
chr2 (46-92)||(22899901-22899947)
chr2 (282-344)||(29181698-29181760)
chr2 (116-152)||(2200794-2200830)
chr2 (116-152)||(15602461-15602497)
chr2 (105-156)||(35112871-35112923)
[»] scaffold0983 (1 HSPs)
scaffold0983 (46-96)||(1856-1906)
[»] chr8 (4 HSPs)
chr8 (265-364)||(34411903-34411999)
chr8 (103-154)||(42104441-42104492)
chr8 (115-154)||(42104510-42104549)
chr8 (102-154)||(35750973-35751025)
[»] chr3 (7 HSPs)
chr3 (46-150)||(7725569-7725678)
chr3 (46-153)||(7724008-7724121)
chr3 (17-96)||(29255741-29255823)
chr3 (103-154)||(23707181-23707232)
chr3 (103-154)||(23725637-23725688)
chr3 (103-154)||(23744093-23744144)
chr3 (103-154)||(23773769-23773820)
[»] scaffold0091 (1 HSPs)
scaffold0091 (102-153)||(2800-2851)
[»] chr5 (6 HSPs)
chr5 (101-153)||(30667406-30667458)
chr5 (115-155)||(35272056-35272096)
chr5 (103-150)||(10143127-10143174)
chr5 (108-153)||(7120882-7120927)
chr5 (104-145)||(14394702-14394743)
chr5 (105-156)||(2312988-2313040)
[»] chr1 (1 HSPs)
chr1 (102-153)||(26779700-26779751)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 265 - 546
Target Start/End: Original strand, 30610451 - 30610744
Alignment:
Q  265 ctcaatttttctcaattgttgcatctcaaccattaaattgaatctatcatttctttataattttattgctaattttctctctcgtgtttgatggttaaga 364  Q
    ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30610451 ctcaatttttctcaattgttgtatctgaaccattaaattcaatctatcatttctttataattttatttctaattttctctctcgtgtttgatggttaaga 30610550  T
Q  365 cttaagatgatacaattgaaaaagaaaattgagaggaatccaattgagagaattccctctctgaagatggaaaagtaaatgcatgccgattcaaaag--- 461  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       
T  30610551 cttaagatgatacaattgaaaaaaaaaattgagaggaatccaattgagagaattccctttctgaagatggaaaagtaaatgcatgccgattcaaaagtta 30610650  T
Q  462 ---------tatcatatcatgaacaactaaacttgcttagtaatatgaagatttcaagcttcactcagttttgcttgagagtcggacacttgcc 546  Q
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30610651 cacaatgattatcacatcatgaacaactaaacttgcttagtaatatgaagatttcaagcttcattcagttttgcttgagagtcggacacttgcc 30610744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 30610153 - 30610298
Alignment:
Q  15 agagatggtagcaaaaattctgattgtggggagaagatgaaaaaggaaatgagtttatgataattgatataataaggtgaggaacacttttttaatctcg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  30610153 agagatggtagcaaaaattctgattgtggggagaagatgaaaaaggaaatgagtttatgataattgatataataaggtgaggtacacttttttaatctca 30610252  T
Q  115 accatctatttttgatctaatggttgataatcattctcatatatat 160  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  30610253 accatctatttttgatctaatggtggataatcattctcatatatat 30610298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 3803255 - 3803176
Alignment:
Q  20 tggtagcaaaaattctgattgtggggagaag---atgaaaaaggaaatgagtttatgataattgatataataaggtgagg 96  Q
    |||||||| ||||  ||||||||||||||||   ||||||| |||||||||||||||| |||||||||||||||||||||    
T  3803255 tggtagcacaaatcttgattgtggggagaagtagatgaaaagggaaatgagtttatgagaattgatataataaggtgagg 3803176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 25092813 - 25092865
Alignment:
Q  101 cttttttaatctcgaccatctatttttgatctaatggttgataatcattctca 153  Q
    ||||||||||||| | |||| |||||||||||||||||| |||||||||||||    
T  25092813 cttttttaatctcaatcatccatttttgatctaatggttaataatcattctca 25092865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 48339754 - 48339802
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattct 151  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  48339754 tttttaatctcaaccatctatttatgatctaatggttgatgatcattct 48339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 35657578 - 35657458
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataa---ttgatataataaggtgaggaaca------cttttttaatctcgaccatctatttttgatctaatg 136  Q
    |||||||||||| |||||||| ||||| | ||   ||||||||||||||| || ||||      | ||||||||||| ||||| ||||||| ||||||||    
T  35657578 agaagatgaaaagggaaatgaatttataagaagaattgatataataaggtaagcaacatatgtgcctttttaatctcaaccatttattttttatctaatg 35657479  T
Q  137 gttgataatcattctcatata 157  Q
    | |||| ||||||||||||||    
T  35657478 gatgatgatcattctcatata 35657458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 52305900 - 52305849
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||    
T  52305900 tttttaatctcaaccatttatttttaatctaatggttgatgatcattctcat 52305849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 35318331 - 35318381
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctca 153  Q
    ||||||||||| ||||| ||||||| |||||||||||||| ||||||||||    
T  35318331 tttttaatctcaaccatttatttttaatctaatggttgatgatcattctca 35318381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 35658065 - 35658178
Alignment:
Q  48 aagatgaaaaagg-aaatgagtttatgataattgatataataaggtgaggaaca------cttttttaatctcgaccatctatttttgatctaatggttg 140  Q
    ||||||||||||| |||||| ||||| | ||||||||||||||||| |||||||      | |||||||||||  |||| ||||||||||||||  | ||    
T  35658065 aagatgaaaaagggaaatgaatttataaaaattgatataataaggtaaggaacatatgtgcctttttaatctcagccatttatttttgatctaacaggtg 35658164  T
Q  141 ataatcattctcat 154  Q
    || |||||||||||    
T  35658165 atgatcattctcat 35658178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 47297090 - 47297038
Alignment:
Q  312 catttctttataattttattgctaattttctctctcgtgtttgatggttaaga 364  Q
    |||||||| ||||||||||| || ||||||||| || ||||||||||||||||    
T  47297090 catttcttcataattttattcctcattttctctttcatgtttgatggttaaga 47297038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 33960517 - 33960572
Alignment:
Q  102 ttttttaatctcgaccatctatttttgatctaatggttgataatcattctcatata 157  Q
    |||||||||||  | ||| || ||||||||| ||||||||||||||||||||||||    
T  33960517 ttttttaatctgaatcatttaattttgatctgatggttgataatcattctcatata 33960572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 35317770 - 35317720
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgagg 96  Q
    |||||||||||| |||||||| || |||| |||||||||||||| ||||||    
T  35317770 agaagatgaaaagggaaatgaattcatgaaaattgatataataaagtgagg 35317720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 29099526 - 29099485
Alignment:
Q  104 ttttaatctcgaccatctatttttgatctaatggttgataat 145  Q
    |||||||||| | |||||| ||||||||||||||||||||||    
T  29099526 ttttaatctccatcatctacttttgatctaatggttgataat 29099485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 26341538 - 26341486
Alignment:
Q  105 tttaatctcgaccatctatttttgatctaatggttgat-aatcattctcatat 156  Q
    ||||||||| ||||||||||||| ||||||||| |||| || |||||||||||    
T  26341538 tttaatctcaaccatctatttttaatctaatggctgataaaacattctcatat 26341486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 1825440 - 1825555
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgaggaaca----cttttttaatctcgaccatctatttttgatctaatggttga 141  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |      |||||||| || ||||| ||||||  |||||||||||||    
T  1825440 agaagatgaaaaaggaaatgagtttatgagaattgatctaataaggtgaggtatatgtgactttttaatgtcaaccatttattttgaatctaatggttga 1825539  T
Q  142 taatcattctcatata 157  Q
    ||||||||||||||||    
T  1825540 taatcattctcatata 1825555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 12383425 - 12383488
Alignment:
Q  268 aatttttctcaattgttgcatctcaaccattaaattgaatctatcatttctttataattttatt 331  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||    
T  12383425 aatttttttcaattgttgcatctcaaccatcaaattcaatctatcatttctttttaattttatt 12383488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 5179253 - 5179289
Alignment:
Q  260 attcactcaatttttctcaattgttgcatctcaacca 296  Q
    |||| |||||||||||||||||||| |||||||||||    
T  5179253 attctctcaatttttctcaattgttacatctcaacca 5179289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 5281067 - 5281103
Alignment:
Q  260 attcactcaatttttctcaattgttgcatctcaacca 296  Q
    |||| |||||||||||||||||||| |||||||||||    
T  5281067 attctctcaatttttctcaattgttacatctcaacca 5281103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 11698062 - 11698175
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgaggaacac------ttttttaatctcgaccatctatttttgatctaatggtt 139  Q
    |||| ||||||| |||||||||||||||| ||||||| ||||||| ||||| |||       |||||||||||| ||||| |||||||||||||||| ||    
T  11698062 agaaaatgaaaatggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgattttttaatctcaaccatttatttttgatctaatgatt 11698161  T
Q  140 gataatcattctca 153  Q
    ||| ||||||||||    
T  11698162 gatgatcattctca 11698175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 8692008 - 8691961
Alignment:
Q  27 aaaaattctgattgtggggagaagatgaaaaaggaaatgagtttatga 74  Q
    |||||||||||||||  |||||||||||||| ||||||||||||||||    
T  8692008 aaaaattctgattgtcaggagaagatgaaaagggaaatgagtttatga 8691961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 35779318 - 35779267
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||||||||| || |||||||||||||| ||||||||||||| ||||||||    
T  35779318 tttttaatctcaactatctatttttgatcgaatggttgataattattctcat 35779267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 11697434 - 11697380
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcatata 157  Q
    ||||||||||| ||||| |||||||||||||||  ||||| ||||||||||||||    
T  11697434 tttttaatctcaaccatttatttttgatctaataattgatgatcattctcatata 11697380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 47362743 - 47362797
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcatata 157  Q
    ||||||||||| | ||| ||||||||||||| |||||||| ||||||||||||||    
T  47362743 tttttaatctcaatcatttatttttgatctagtggttgatgatcattctcatata 47362797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 47361193 - 47361242
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctc 152  Q
    |||| |||||| ||||||||||||||||||||| |||||| |||||||||    
T  47361193 ttttcaatctcaaccatctatttttgatctaatagttgatgatcattctc 47361242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 47362133 - 47362084
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctc 152  Q
    |||| |||||| ||||||||||||||||||||| |||||| |||||||||    
T  47362133 ttttcaatctcaaccatctatttttgatctaatagttgatgatcattctc 47362084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 47362678 - 47362729
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgat---ataataaggtga 94  Q
    |||||||||||| |||||||||||||||| |||||||   ||||||||||||    
T  47362678 agaagatgaaaagggaaatgagtttatgagaattgatgtaataataaggtga 47362729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 287566 - 287602
Alignment:
Q  116 ccatctatttttgatctaatggttgataatcattctc 152  Q
    |||||||||||||||||||||||||| | ||||||||    
T  287566 ccatctatttttgatctaatggttgagattcattctc 287602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 37034895 - 37034843
Alignment:
Q  105 tttaatctcgaccatctatttttgatctaatggttgat-aatcattctcatat 156  Q
    ||||||||| ||||||||||||| ||||||||| |||| || |||||||||||    
T  37034895 tttaatctcaaccatctatttttaatctaatggctgataaaacattctcatat 37034843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 3130042 - 3130158
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgaggaaca-----ct-tttttaatctcgaccatctatttttgatctaatggtt 139  Q
    |||||||||||| |||||||||||||| | ||||||||||||| ||| |||  ||     || ||||||||||| |||||||||||| |||| |||||||    
T  3130042 agaagatgaaaagggaaatgagtttattagaattgatataatagggtaaggtgcatgtgtctatttttaatctcaaccatctattttagatcgaatggtt 3130141  T
Q  140 gataatcattctcatat 156  Q
    ||||| |||||||||||    
T  3130142 gataagcattctcatat 3130158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 43992419 - 43992364
Alignment:
Q  102 ttttttaatctcgaccatctatttttgatctaatggttgataatcattctcatata 157  Q
    ||||||||||||  |||| |||||||||||||||||||||| ||||||||||||||    
T  43992419 ttttttaatctcagccatttatttttgatctaatggttgatgatcattctcatata 43992364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 17369519 - 17369469
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgagg 96  Q
    ||||||||||||||||||||||||||||| || |||| | ||||| |||||    
T  17369519 agaagatgaaaaaggaaatgagtttatgagaaatgatgtgataagatgagg 17369469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 22899901 - 22899947
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggt 92  Q
    |||||||||||| | |||||||||||||| ||||||| |||||||||    
T  22899901 agaagatgaaaaggaaaatgagtttatgagaattgatgtaataaggt 22899947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 29181698 - 29181760
Alignment:
Q  282 gttgcatctcaaccattaaattgaatctatcatttctttataattttattgctaattttctct 344  Q
    |||||||||||||||| ||||| ||||| | |||| |||||||||||||| || ||| |||||    
T  29181698 gttgcatctcaaccatcaaattcaatctcttatttttttataattttatttcttattgtctct 29181760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 2200830 - 2200794
Alignment:
Q  116 ccatctatttttgatctaatggttgataatcattctc 152  Q
    |||||||||||||||||||||||||| | ||||||||    
T  2200830 ccatctatttttgatctaatggttgagattcattctc 2200794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 15602461 - 15602497
Alignment:
Q  116 ccatctatttttgatctaatggttgataatcattctc 152  Q
    |||||||||||||||||||||||||| | ||||||||    
T  15602461 ccatctatttttgatctaatggttgagattcattctc 15602497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 35112923 - 35112871
Alignment:
Q  105 tttaatctcgaccatctatttttgatctaatggttgat-aatcattctcatat 156  Q
    ||||||||| ||||||||||||| ||||||||| |||| || |||||||||||    
T  35112923 tttaatctcaaccatctatttttaatctaatggctgataaaacattctcatat 35112871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 1856 - 1906
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgagg 96  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  1856 agaagataaaaaaggaaatgagtttatgagaattgatataataaggtgagg 1906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 364
Target Start/End: Original strand, 34411903 - 34411999
Alignment:
Q  265 ctcaatttttctcaattgttgcatctcaaccattaaattgaatctatcatttctttataattttattgctaattttctctctcgtgtttgatggttaaga 364  Q
    |||||||||||| ||||||| ||||| |||||| || || ||||| |||||||||||| ||||| |  || |||||||||||| ||||||||||||||||    
T  34411903 ctcaatttttcttaattgttacatctaaaccatcaa-ttaaatctctcatttctttattatttttt--ctcattttctctctcatgtttgatggttaaga 34411999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 42104492 - 42104441
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  42104492 tttttaatcacaaccatttatttttgatctaatggttgataatcattctcat 42104441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 42104510 - 42104549
Alignment:
Q  115 accatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  42104510 accatttatttttgatctaatagttgataatcattctcat 42104549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 35751025 - 35750973
Alignment:
Q  102 ttttttaatctcgaccatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||| |||||| | ||||||||||| ||||||||||  ||||||||||||||    
T  35751025 tttttaaatctcaatcatctatttttaatctaatggtccataatcattctcat 35750973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 7725569 - 7725678
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgaggaaca------cttttttaatctcgaccatctatttttgatctaatggtt 139  Q
    |||||||||||| |||||||| ||||||| |||||||||||||| ||||||  ||        ||||||||||| ||||| |||||||||||||||||||    
T  7725569 agaagatgaaaagggaaatgaatttatgagaattgatataataaagtgaggtgcatatgtgactttttaatctcaaccat-tatttttgatctaatggtt 7725667  T
Q  140 gataatcattc 150  Q
    ||| |||||||    
T  7725668 gatgatcattc 7725678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 7724121 - 7724008
Alignment:
Q  46 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgaggaacactt------ttttaatctcgaccatctatttttgatctaatggtt 139  Q
    |||||||||||| |||||||| ||||||| |||| ||||||||| |||| | |||  |      |||||||||| ||||| |||| ||||||||||||||    
T  7724121 agaagatgaaaagggaaatgaatttatgagaatttatataataaagtgaagtacatatgtgactttttaatctcaaccatttattattgatctaatggtt 7724022  T
Q  140 gataatcattctca 153  Q
    ||| ||||||||||    
T  7724021 gatgatcattctca 7724008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 29255741 - 29255823
Alignment:
Q  17 agatggtagcaaaaattctgattgtggggagaaga---tgaaaaaggaaatgagtttatgataattgatataataaggtgagg 96  Q
    ||||||||||| ||||| |||||||||| ||||||   |||||||| |||||||||||||  |||| ||||||||||| ||||    
T  29255741 agatggtagcagaaattttgattgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaatttatataataaggagagg 29255823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 23707181 - 23707232
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||    
T  23707181 tttttaatctcaaccatatattttttatctaatggttgataattattctcat 23707232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 23725637 - 23725688
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||    
T  23725637 tttttaatctcaaccatatattttttatctaatggttgataattattctcat 23725688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 23744093 - 23744144
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||    
T  23744093 tttttaatctcaaccatatattttttatctaatggttgataattattctcat 23744144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 23773769 - 23773820
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattctcat 154  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||    
T  23773769 tttttaatctcaaccatatattttttatctaatggttgataattattctcat 23773820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 2851 - 2800
Alignment:
Q  102 ttttttaatctcgaccatctatttttgatctaatggttgataatcattctca 153  Q
    ||||| ||||||| ||||| |||||||||||||||||| |||||||||||||    
T  2851 tttttaaatctcggccatccatttttgatctaatggttcataatcattctca 2800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 30667406 - 30667458
Alignment:
Q  101 cttttttaatctcgaccatctatttttgatctaatggttgataatcattctca 153  Q
    ||||||||||||| | |||| |||||||||||||||||| |||| ||||||||    
T  30667406 cttttttaatctcaatcatccatttttgatctaatggttaataaacattctca 30667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 35272096 - 35272056
Alignment:
Q  115 accatctatttttgatctaatggttgataatcattctcata 155  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  35272096 accatctattttagatctaatggtttataatcattctcata 35272056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 10143127 - 10143174
Alignment:
Q  103 tttttaatctcgaccatctatttttgatctaatggttgataatcattc 150  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||| ||||    
T  10143127 tttttaatctcaaccatctatttttaatctaatagttgataattattc 10143174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 7120882 - 7120927
Alignment:
Q  108 aatctcgaccatctatttttgatctaatggttgataatcattctca 153  Q
    |||||| |||||||||||||||| | ||||||||| ||||||||||    
T  7120882 aatctcaaccatctatttttgatatgatggttgatgatcattctca 7120927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 14394743 - 14394702
Alignment:
Q  104 ttttaatctcgaccatctatttttgatctaatggttgataat 145  Q
    |||||||||| ||||||||||||| |||||||| ||||||||    
T  14394743 ttttaatctcaaccatctattttttatctaatgattgataat 14394702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 2313040 - 2312988
Alignment:
Q  105 tttaatctcgaccatctatttttgatctaatggttgat-aatcattctcatat 156  Q
    ||||||||| ||||||||||||| ||||||||| |||| || |||||||||||    
T  2313040 tttaatctcaaccatctatttttaatctaatggctgataaaacattctcatat 2312988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 26779700 - 26779751
Alignment:
Q  102 ttttttaatctcgaccatctatttttgatctaatggttgataatcattctca 153  Q
    ||||| ||||||  ||||| |||||||||||||||||| |||||||||||||    
T  26779700 tttttaaatctcagccatccatttttgatctaatggttcataatcattctca 26779751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University