View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20429_low_1 (Length: 711)
Name: NF20429_low_1
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20429_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 34813234 - 34813670
Alignment:
| Q |
20 |
cagaaatggaatcagcttgaaaaggcagtatctagacttcaagaatatggtttccctaataagaattgaatcactttttaaatcatgggtgtgttcatgt |
119 |
Q |
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| T |
34813234 |
cagaaatggaatcagcttgaaaaggcagtatctagacttcaagaatatggtttccctaataagaattgaatcactttttaaatcatgggtgtgttcatgt |
34813333 |
T |
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| Q |
120 |
ttatattttgttataaatgtttgtctttgtaataaaatgtgtaaactatagtacttatgttgtgtgtgatatgaaggacattgaaggaaattaagctgcc |
219 |
Q |
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| T |
34813334 |
ttatattttgttataaatgtttgtctttgtaataaaatgtgtaaactatagtacttatgttgtgtgtgatatgaaggacattgaaggaaattaagctgcc |
34813433 |
T |
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| Q |
220 |
ttgtttaaataaagtttgatcagatggtttatttaatattatatgcgtcaagttctatgctttcttcatgtcnnnnnnntgttctaagctttctcataat |
319 |
Q |
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| T |
34813434 |
ttgtttaaataaagtttgatcagatggtttatttaatattatatgcgtcaagttctatgctttcttcatgtcaaaaaaatgttctaagctttctcataat |
34813533 |
T |
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| Q |
320 |
gtatattaaacactggtttcaactcctttagctagagtgcattttcttcttcaagtttttataccacaaagcaaatttaagggcatggtttttcacgata |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34813534 |
gtatattaaacactggtttcaactcctttagctagagtgcattttcttcttcaagtttttataccacaaagcaaatttaagggcatggtttttcacgata |
34813633 |
T |
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| Q |
420 |
ctattaggatgaagtgtgagatggacaagcaaatgat |
456 |
Q |
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| T |
34813634 |
cttttaggatgaagtgtgagatggacaagcaaatgat |
34813670 |
T |
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