View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20429_low_14 (Length: 296)
Name: NF20429_low_14
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20429_low_14 |
 | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 16125051 - 16124783
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16125051 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
16124952 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16124951 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
16124852 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16124851 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatct |
16124783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 16127204 - 16126936
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16127204 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
16127105 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16127104 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
16127005 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16127004 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatct |
16126936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 16334600 - 16334868
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
16334600 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
16334699 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16334700 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc |
16334799 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16334800 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatct |
16334868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 36017537 - 36017270
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||| ||| || |||| ||||||| |||| |||||||||||| |||||||||| ||||| |
|
|
| T |
36017537 |
atactcgtagcaaattcacaagccatcttaatgaagctctgaaaaggagtggcgttaggacatttgtagatgacagcgagcttgaaaaaggagacgagat |
36017438 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||| || || |||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
36017437 |
ctcatcagcactgatcaaagccattgaggagtcagatgcatctatagtcatattctcgaaagactatgcttcttctaaatgatgcttgaatgaactcgtc |
36017338 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
280 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
36017337 |
aagattctagaatgcaagaaagatcagggacaaattgtgataccgattttctacgaaatagatccatc |
36017270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 36034447 - 36034176
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| || |||||||||| || ||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
36034447 |
atactcgtagcaaattcacaagccatcttaataaagctctgcaaaagagcggcctttggacatttatagacgacagcgagcttgaaaaaggagacgagat |
36034348 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatc----tatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaact |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||| |||| |||| || ||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36034347 |
ctcatcagcactgatcaaagccattgaggagtcagatgcatctctatatattcatattctcaaaagactatgcttcttcaaaatggtatttgaatgaact |
36034248 |
T |
|
| Q |
209 |
cgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
36034247 |
cgtcaagattctagaatgcaagaaagatcatgggcagattgtgataccgattttctacgaaatagatccatc |
36034176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 36025632 - 36025368
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| ||| |||| | ||| ||||||||||| |||| |||||| |||||||||| ||||| |
|
|
| T |
36025632 |
atactcgtagaaacttcacaagccatctttatgaagctctgagcaagaaag---ttataacatttatagatgacaatgagcttgaaaaaggagacgagat |
36025536 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
212 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||| | ||||||||| |||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
36025535 |
ctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc |
36025436 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
36025435 |
aagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatc |
36025368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 36004871 - 36004607
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||| ||| |||| ||| ||||||||||| |||| |||||| |||||||||| ||||| |
|
|
| T |
36004871 |
atactggtagaaagttcacaagccatctttatgaagctctgagcaagaaaa---ttataacatttatagatgacaatgagcttgaaaaaggagacgagat |
36004775 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
212 |
Q |
| |
|
||| ||||||||||||||||| |||||||| || | ||||||||| |||||||| ||| ||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
36004774 |
ctcgtcagcactgatcaaagctattgaagattcgtctgcatctatcgtcatcttctcaaaagactacgcttcctcaaaatggtgcttgaatgaactcgtc |
36004675 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
280 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
36004674 |
aagattctagaatgtaagaaagatcagggacagattgtgataccgattttctacgaaatagatccatc |
36004607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 74 - 285
Target Start/End: Complemental strand, 36009861 - 36009650
Alignment:
| Q |
74 |
atttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaa |
173 |
Q |
| |
|
|||||| |||||| | || ||| |||||||||||||||| |||||| |||| |||||||||||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
36009861 |
atttatggacgacggtgatcttgaaaaaggagatgagatatcatcatcactaatcaaagccattgaggagtcatacacatctatagtcatcttttcaaaa |
36009762 |
T |
|
| Q |
174 |
gactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatag |
273 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||| | |||| |
|
|
| T |
36009761 |
gattatgcttcttcaaaatggtgcttgaatgaactcgtcaaaattctagaatgcaaaaaagatttgggacaaattgtgatacctgttttcttcggaataa |
36009662 |
T |
|
| Q |
274 |
atccatctgatg |
285 |
Q |
| |
|
||||||| |||| |
|
|
| T |
36009661 |
atccatcggatg |
36009650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 91 - 280
Target Start/End: Complemental strand, 23480850 - 23480661
Alignment:
| Q |
91 |
agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaa |
190 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||| |||||||||||||||| |
|
|
| T |
23480850 |
agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgagaagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaa |
23480751 |
T |
|
| Q |
191 |
atggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
280 |
Q |
| |
|
|||||| |||||||| ||| |||||||| |||||||||||| |||| | ||| |||||||||||| |||| || ||||||||||||| |
|
|
| T |
23480750 |
atggtgcttgaatgagctcaagaagattcttgaatgcaagaaatataaggaacacattgtgataccagttttttacaaaatagatccatc |
23480661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 75 - 280
Target Start/End: Complemental strand, 23465509 - 23465304
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||| |
|
|
| T |
23465509 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23465410 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
274 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| | ||| |||||||||||| |||| || | ||||| |
|
|
| T |
23465409 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacataga |
23465310 |
T |
|
| Q |
275 |
tccatc |
280 |
Q |
| |
|
|||||| |
|
|
| T |
23465309 |
tccatc |
23465304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 75 - 280
Target Start/End: Complemental strand, 23354006 - 23353801
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||| |
|
|
| T |
23354006 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23353907 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
274 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| ||| |||||||||||| |||| || | ||||| |
|
|
| T |
23353906 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgtaacagattgtgataccagttttttacaacataga |
23353807 |
T |
|
| Q |
275 |
tccatc |
280 |
Q |
| |
|
|||||| |
|
|
| T |
23353806 |
tccatc |
23353801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 75 - 280
Target Start/End: Complemental strand, 23406855 - 23406650
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||| |
|
|
| T |
23406855 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23406756 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
274 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| | ||| ||||||||||| |||| || | ||||| |
|
|
| T |
23406755 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgttttttacaacataga |
23406656 |
T |
|
| Q |
275 |
tccatc |
280 |
Q |
| |
|
|||||| |
|
|
| T |
23406655 |
tccatc |
23406650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 280
Target Start/End: Complemental strand, 23449379 - 23449171
Alignment:
| Q |
72 |
acatttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcag |
171 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||| |
|
|
| T |
23449379 |
acatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcag |
23449280 |
T |
|
| Q |
172 |
aagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaat |
271 |
Q |
| |
|
|| |||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| ||| |||||||||||| |||| || | || |
|
|
| T |
23449279 |
aaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgcaacagattgtgataccagttttttacaacat |
23449180 |
T |
|
| Q |
272 |
agatccatc |
280 |
Q |
| |
|
||||||||| |
|
|
| T |
23449179 |
agatccatc |
23449171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 23435574 - 23435419
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||| |
|
|
| T |
23435574 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23435475 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaag |
230 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||| |||||||||||||||||| |
|
|
| T |
23435474 |
actatgcttcttcaaaatggtgcttaaatgagctcaaaaagattctagaatgcaag |
23435419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 75 - 280
Target Start/End: Complemental strand, 23501139 - 23500934
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||| |
|
|
| T |
23501139 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23501040 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatgga-caaattgtgataccaattttctatgaaatag |
273 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| |||||||| ||||| |||||| || ||||| || |||||||||||| |||| || | |||| |
|
|
| T |
23501039 |
actatgcttcgtcaaaatggtgcttgaatgagctcaaaaagattcttgaatgtaagaaatat-atggagcagattgtgataccagttttttacaacatag |
23500941 |
T |
|
| Q |
274 |
atccatc |
280 |
Q |
| |
|
||||||| |
|
|
| T |
23500940 |
atccatc |
23500934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 21087477 - 21087312
Alignment:
| Q |
91 |
agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaa |
190 |
Q |
| |
|
||||||||||||||||| ||||| || ||| ||| ||||||||||||||||||||| |||||| || | |||||| |||||| |||| ||||| ||||| |
|
|
| T |
21087477 |
agcttaaaaaaggagataagatcacaccagaactcatcaaagccattgaagagtcacatgcatcgattgacatcttctcagaaaactacgcttcctcaaa |
21087378 |
T |
|
| Q |
191 |
atggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgatacc |
256 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
21087377 |
atggtgcttgaatgagctcaaaaagattctagaatgcaagaaatataaggaacaaattgtgatacc |
21087312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 89 - 279
Target Start/End: Complemental strand, 21088667 - 21088477
Alignment:
| Q |
89 |
cgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttca |
188 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| | ||| |||| ||||| |||||| ||| |||||| || |||||||||||| |||||||||| ||| |
|
|
| T |
21088667 |
cgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcacgtgtatctattgttatcttttcagaaaactatgcttcctca |
21088568 |
T |
|
| Q |
189 |
aaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccat |
279 |
Q |
| |
|
|||||||| |||||||| ||| ||||||| ||||||||||||| || | ||| ||||||||||| |||| || |||||||||||| |
|
|
| T |
21088567 |
aaatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacctgttttttacaaaatagatccat |
21088477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 75 - 280
Target Start/End: Complemental strand, 23441986 - 23441781
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||| |||| || ||||||| |||| ||||||||| |||||| || ||||| |||||||| |||||| |
|
|
| T |
23441986 |
tttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaa |
23441887 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
274 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| | ||| ||||||||||| |||| || | ||||| |
|
|
| T |
23441886 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacataga |
23441787 |
T |
|
| Q |
275 |
tccatc |
280 |
Q |
| |
|
|||||| |
|
|
| T |
23441786 |
tccatc |
23441781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 23456118 - 23455985
Alignment:
| Q |
97 |
aaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtg |
196 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| ||||||| |||||| || ||||| |||||||| |||||| |||| ||||| ||||||||||| |
|
|
| T |
23456118 |
aaaaaggagatgagatctcaccaacactcatcaaaaccattgaggagtcacatgtgtctattgtcatcttctcagaaaactacgcttcctcaaaatggtg |
23456019 |
T |
|
| Q |
197 |
tttgaatgaactcgtcaagattctagaatgcaag |
230 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |
|
|
| T |
23456018 |
tttgaatgatctcaaaaagattctagaatgcaag |
23455985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 75 - 280
Target Start/End: Complemental strand, 23474518 - 23474313
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||| |||| || ||||||| |||| ||||||||| |||||| || ||||| |||||||| |||||| |
|
|
| T |
23474518 |
tttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaa |
23474419 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
274 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| | ||| ||||||||||| |||| || | ||||| |
|
|
| T |
23474418 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacataga |
23474319 |
T |
|
| Q |
275 |
tccatc |
280 |
Q |
| |
|
|||||| |
|
|
| T |
23474318 |
tccatc |
23474313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 23388495 - 23388337
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||| | || || ||||||| |||||| |
|
|
| T |
23388495 |
tttatagacaacaatgagcttgaaaaaggagatgagatctcaccagcactcatcaaagccattgaggagtcacacgtgtcaattatcatcttctcagaaa |
23388396 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa |
233 |
Q |
| |
|
| |||||||| ||||||||||| |||||||| ||| |||||||| ||||||||||| |
|
|
| T |
23388395 |
attatgcttcctcaaaatggtgcttgaatgagctcaagaagattcttcaatgcaagaaa |
23388337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 280
Target Start/End: Original strand, 35766233 - 35766392
Alignment:
| Q |
121 |
cactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattct |
220 |
Q |
| |
|
|||| |||| |||||||||||||||| || ||| | ||||| ||||||||| |||||||||| || || ||||||||| ||||| | || ||||| | |
|
|
| T |
35766233 |
cactcatcacagccattgaagagtcacatgtttctgttgtcatattttcagaaaactatgcttcatccaagtggtgtttggatgaaattgtgaagatcat |
35766332 |
T |
|
| Q |
221 |
agaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
280 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
35766333 |
ggaatgtaagaaagatcggggacaaattgtgatacctgtgttctataaaatagatccatc |
35766392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 280
Target Start/End: Original strand, 12894620 - 12894825
Alignment:
| Q |
75 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
174 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||| || |||||| |||||||||||||||| ||||||| ||||||||| |||||||| ||| || |
|
|
| T |
12894620 |
tttatagatgacaatgagcttcaaaaaggagatgagatatcctcagcattgatcaaagccattgaggagtcatatgcatctattgtcatcttctcaatag |
12894719 |
T |
|
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
274 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || |||||||| |
|
|
| T |
12894720 |
actatgcttcctcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagatcatggacaaattgtgatacctgttttttacgaaataga |
12894819 |
T |
|
| Q |
275 |
tccatc |
280 |
Q |
| |
|
|||||| |
|
|
| T |
12894820 |
tccatc |
12894825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 13668 - 13502
Alignment:
| Q |
90 |
gagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaa |
189 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||| |||||||||| |||| |
|
|
| T |
13668 |
gagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaa |
13569 |
T |
|
| Q |
190 |
aatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgatacc |
256 |
Q |
| |
|
||||||| || ||||| ||| |||||||| |||||||||||| ||| | ||| ||||||||||| |
|
|
| T |
13568 |
aatggtgcttaaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacc |
13502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 9672 - 9812
Alignment:
| Q |
90 |
gagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaa |
189 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| || ||||| |||||| |||||||||| |||| |
|
|
| T |
9672 |
gagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtaatcttctcagaaaactatgcttcctcaa |
9771 |
T |
|
| Q |
190 |
aatggtgtttgaatgaactcgtcaagattctagaatgcaag |
230 |
Q |
| |
|
||||||| || ||||| ||| |||||||| ||||||||| |
|
|
| T |
9772 |
aatggtgcttaaatgagctcaaaaagattcttgaatgcaag |
9812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 167562 - 167677
Alignment:
| Q |
90 |
gagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaa |
189 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||| |||||||||||||| |||| | ||||||||| |||||||| |||||| |||||||||| ||| |
|
|
| T |
167562 |
gagcttcaaaaaggagatgagatctcgccaacactcatcaaagccattgaggagtaacatgcatctattgtcatcttctcagaaaactatgcttcctcat |
167661 |
T |
|
| Q |
190 |
aatggtgtttgaatga |
205 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
167662 |
aatggtgcttgaatga |
167677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12178831 - 12178788
Alignment:
| Q |
168 |
tcagaagactatgcttcttcaaaatggtgtttgaatgaactcgt |
211 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
12178831 |
tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt |
12178788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12190526 - 12190483
Alignment:
| Q |
168 |
tcagaagactatgcttcttcaaaatggtgtttgaatgaactcgt |
211 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
12190526 |
tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt |
12190483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12423259 - 12423216
Alignment:
| Q |
168 |
tcagaagactatgcttcttcaaaatggtgtttgaatgaactcgt |
211 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
12423259 |
tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt |
12423216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12434954 - 12434911
Alignment:
| Q |
168 |
tcagaagactatgcttcttcaaaatggtgtttgaatgaactcgt |
211 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
12434954 |
tcagaaaactatgcatcttcaacatggtgtttgaatgaactcgt |
12434911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 6097930 - 6097884
Alignment:
| Q |
168 |
tcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaa |
214 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
6097930 |
tcagaaaactatgcttcctcaaaatggtgtttggatgaactcctcaa |
6097884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 5568730 - 5568763
Alignment:
| Q |
175 |
actatgcttcttcaaaatggtgtttgaatgaact |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
5568730 |
actatgcttcttcaacatggtgtttgaatgaact |
5568763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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