View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20429_low_15 (Length: 267)
Name: NF20429_low_15
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20429_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 1321788 - 1322038
Alignment:
| Q |
1 |
aaatacaaataaaacatacgatgtcaaatgtaatatctatattttaatgttcaaataacataattgtactttaatatttcaaccactttggggttataac |
100 |
Q |
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| T |
1321788 |
aaatacagataaaacatacgatgtcagatgtaatatctatattttaatgttcaaataacataattgtactttaatatttcaaccacttgggggttataac |
1321887 |
T |
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| Q |
101 |
aatttacattttgtgtgtgtaaataagatgatagatttgtgaaggtaaattgagaaaacatagaacaaaaggtaaatgacaagaacaaggcaatccaaag |
200 |
Q |
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| T |
1321888 |
aatttacattttgtgtgtgtaaataagatgatagatttgtgaaggtaaattgagaaaacatagaacaaaaggtaaatgacaagaagaaggcaatccaaag |
1321987 |
T |
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| Q |
201 |
ggaccttaaggttatggtcattctcttgtagttaatctccaacattcaaac |
251 |
Q |
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| T |
1321988 |
ggaccttaaggttatggtcattctcttgtagttaatctccaacattcaaac |
1322038 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 47464521 - 47464489
Alignment:
| Q |
31 |
taatatctatattttaatgttcaaataacataa |
63 |
Q |
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| T |
47464521 |
taatgtctatattttaatgttcaaataacataa |
47464489 |
T |
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