View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20429_low_3 (Length: 611)
Name: NF20429_low_3
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20429_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 14 - 592
Target Start/End: Complemental strand, 38691536 - 38690958
Alignment:
| Q |
14 |
ataatacttgtcattgaatattagatggtacaattttaacattaaattgacccttcatgttacacttaacaggtttgggggttaaagacaaagcaagtca |
113 |
Q |
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| T |
38691536 |
ataatacttgtcattgaatattagatggtacaattttaacattaaattgacccttcatgttacacttaacaggtttaggggttaaagacaaagcaagtca |
38691437 |
T |
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| Q |
114 |
tatgttgtctttaaatgggattgatatatacaataagatctcatggatgcaaatgttgttaatatactaaccgaaaaattgatagcaacaaaattgtgga |
213 |
Q |
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| T |
38691436 |
tatgttgtctttaaatgggattgatatatacaataagatctcatgtatgcaaatgttgttaatatactaaccgaaaaattgatagcaacaaaattgtgga |
38691337 |
T |
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| Q |
214 |
aattctcttctgtttatttattcattgaaacagtacaaagagtgcaatttacactgaaattgttatgaggaatcactatgaaaagtactgaagataaagg |
313 |
Q |
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| T |
38691336 |
aattcgcttctgtttatttattcattgaaacagtacaaagagtgcaatttacactgatattgttatgaggaatcactatgaaaagtactgaagataaagg |
38691237 |
T |
|
| Q |
314 |
taaggaaacagaaaagaaatttgttgttgtaaacttagaatattcccttggcttttatctccatttattacataaacaatactggtaatattaatagttg |
413 |
Q |
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| T |
38691236 |
taaggaaacagaaaagaaatttgttgttgtaaacttgtaatattcccttggcttttatctccatttattacataaacaatactggtaatattaatagttg |
38691137 |
T |
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| Q |
414 |
agaatctgcagttgaaaaattaacatataagatatagataatgatggagtatcaagtaattggttcacttaactttaaatttgaaagaattgaagcaaat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38691136 |
agaatctgcagttgaaaaattaacatataagatatagataatgatggagtatcaagtaattggttcacttaactttaaatttgaaagaattgaagcaaat |
38691037 |
T |
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| Q |
514 |
ttgggtaattctaattctctacctatagtctttgattgtataattggtttttataagttaacatagattcatagctatg |
592 |
Q |
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| T |
38691036 |
ttgggtaattctaattctctacctatagtctttgattgtataattggtttttataagttaacatagattcatagctatg |
38690958 |
T |
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