View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20429_low_4 (Length: 585)

Name: NF20429_low_4
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20429_low_4
NF20429_low_4
[»] chr4 (17 HSPs)
chr4 (18-435)||(7058332-7058749)
chr4 (23-435)||(7049416-7049834)
chr4 (22-435)||(7042261-7042681)
chr4 (238-384)||(7007965-7008111)
chr4 (274-384)||(7006155-7006265)
chr4 (108-387)||(6997214-6997495)
chr4 (110-400)||(7015738-7016030)
chr4 (284-410)||(7022817-7022942)
chr4 (114-234)||(7007122-7007247)
chr4 (468-525)||(7058782-7058839)
chr4 (243-383)||(7029531-7029671)
chr4 (110-213)||(7029193-7029301)
chr4 (468-524)||(7049867-7049923)
chr4 (97-182)||(7022428-7022514)
chr4 (114-182)||(7006032-7006100)
chr4 (468-526)||(7042714-7042771)
chr4 (471-523)||(7006282-7006334)
[»] chr2 (2 HSPs)
chr2 (119-169)||(5860441-5860491)
chr2 (119-169)||(5867079-5867129)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 7058332 - 7058749
Alignment:
18 ctcctgtccaattttttaaatattgcttcataaccaagtttctgaaggtgtgtaggatcttaacatgtatcctaatcggaatcattaattttctttcatg 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||    
7058332 ctccggtccaattttttaaatattgcttcataaccaagtttctgaaggtgtgtaggatcttaacatatatcctaatcggaatcagtaatttcctttcatg 7058431  T
118 cagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagattattaataacaagtgatattttgttctattaagaaaaaacaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
7058432 cagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagattattaataacaagtgatattttgttctattaagaaaaaacac 7058531  T
218 tcaatttggtgaaaacaattaagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagct 317  Q
    ||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
7058532 tcaatttggtgaaaacatttaagtgtctttgatgaaattgtgtaatttccttatatcaattttcatgtaattaattttgcagggttcaggacatatagct 7058631  T
318 cctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatgagat 417  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
7058632 cctgagtacactcctgagctatgttttcccatgttcactaggtggatatctaatttgcctttgtaaatcagaagcctaagatggcataaatatatgatat 7058731  T
418 gtacatttgtcaatgatt 435  Q
    || |||||||||||||||    
7058732 gttcatttgtcaatgatt 7058749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 435
Target Start/End: Original strand, 7049416 - 7049834
Alignment:
23 gtccaattttttaaatattgcttcataaccaagtttctgaaggtgtgtaggatcttaacatgtatcctaatcggaatcattaattttctttcatgcagat 122  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||   ||||| |||||| |||||||||||||    
7049416 gtccaattttttaaatattgcttcataaccaagttttcgaaggtgcgtaggatcttaacatgtatcctaatattaatcagtaatttcctttcatgcagat 7049515  T
123 acacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagattattaataa-----caagtgatattttgttctattaagaaaaaacaa 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |     |||||  | ||||||||| ||||| |||||||     
7049516 acacaaggacttactcgaaccgaatgacatatgcaactgtgaaggtaagaaattattaattaaatcacaagtactcttttgttcttttaagtaaaaacac 7049615  T
218 tcaatttggtgaaaacaattaagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaa-ttttgcagggttcaggacatatagc 316  Q
    | ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
7049616 ttaatttcgtgaaaacatttaagtgtctctgatgagattgtgcaatttccttacatcaattttcatgtaattaaattttgcagggttcaggacatatagc 7049715  T
317 tcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatgaga 416  Q
    ||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
7049716 tcctgagtacactcctgagctatgttttcccatgttctctaggtggatatctaatttgcctttgtaaatcataagcctaagatggcataaatatatgaga 7049815  T
417 tgtacatttgtcaatgatt 435  Q
    ||| |||||||||||||||    
7049816 tgttcatttgtcaatgatt 7049834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 22 - 435
Target Start/End: Original strand, 7042261 - 7042681
Alignment:
22 tgtccaattttttaaatattgcttcataaccaagtttctgaaggtgtgtaggatcttaacatgtatcctaatcggaatcattaattttc-tttcatgcag 120  Q
    ||||||||| ||||| | ||||||||||||||||||||||||| ||  |  ||||||||||| ||||||| ||  ||||| |||||||| |||||| |||    
7042261 tgtccaattctttaacttttgcttcataaccaagtttctgaagctgcatcagatcttaacatctatcctagtcttaatcagtaattttcctttcatacag 7042360  T
121 atacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagattattaataaca-----agtgatattttgttctattaagaaaaa-a 214  Q
    |||||||||||||||| | || |  ||||||| ||||||||||||||||||| |||| |||| | |     |||| | ||||||||  |||| ||||| |    
7042361 atacacaaggacttacgcaaatcgcatgacatttgcaactgtgaaggtaagaaattagtaattaaatcataagtgctcttttgttcatttaataaaaaca 7042460  T
215 caatcaatttggtgaaaacaattaagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatata 314  Q
    || |||||||||||| || |   ||||||||||||||||||||| |||  || ||| ||| |||||| |||||||||||||||||||||| ||||||| |    
7042461 cactcaatttggtgagaatatgcaagtgtctttgatgagattgtacaacatctttagatcgattttcgtgtaattaattttgcagggttcgggacataca 7042560  T
315 gctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatatatga 414  Q
    |||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||| || |  ||||||| ||||||||||||    
7042561 gctcctgagtacactcctgagcaatgttttcccatgttcactaggtggatatctaatttgcctttgtaaatcagaatctcaagatggaataaatatatga 7042660  T
415 gatgtacatttgtcaatgatt 435  Q
    ||||| ||||||  |||||||    
7042661 gatgttcatttgcaaatgatt 7042681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 238 - 384
Target Start/End: Original strand, 7007965 - 7008111
Alignment:
238 aagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagtt 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||      
7007965 aagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttctggacatatagctccttagtacactcctgagca 7008064  T
338 atgttttcctatgttcactagatggatatctaatttgcctttgtaaa 384  Q
    ||||||||| ||||||  ||| |||||||||||||||| ||||||||    
7008065 atgttttcccatgttccttaggtggatatctaatttgcgtttgtaaa 7008111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 274 - 384
Target Start/End: Original strand, 7006155 - 7006265
Alignment:
274 caattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaattt 373  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||    
7006155 caattttcatgtaattaattttgcagggttcaggacatacagctcctgagtacactcctgagcaatgttttcccatgttcactaggtggatatctaattt 7006254  T
374 gcctttgtaaa 384  Q
    |||||||||||    
7006255 gcctttgtaaa 7006265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 108 - 387
Target Start/End: Original strand, 6997214 - 6997495
Alignment:
108 ttctttcatgcagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagatt-----attaa-taacaagtgatattttgttc 201  Q
    ||||||||||||||||||||||||| |||||||| | |||||| | |||||| ||||||||||||  ||     ||||| ||||||||||||||||||||    
6997214 ttctttcatgcagatacacaaggacatactcgaatcgaatgacttttgcaaccgtgaaggtaagaacttgactaattaaataacaagtgatattttgttc 6997313  T
202 tattaagaaaaaacaatcaatttggtgaaaacaattaagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcaggg 301  Q
    | ||||||| || || |||| |||||||||  | || ||||||||  | | |||| ||||| ||| ||| |   |||||    |||||||||  ||||||    
6997314 ttttaagaataa-cactcaaattggtgaaat-atttcagtgtcttcaaagggattatgcaaattcattataatgatttttgcttaattaatt--gcaggg 6997409  T
302 ttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaatca 387  Q
    ||||||||||| ||||||||||||||||||||||  ||||||| | ||||||||||| ||||||||||| ||||||||||||||||    
6997410 ttcaggacatacagctcctgagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatca 6997495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 110 - 400
Target Start/End: Original strand, 7015738 - 7016030
Alignment:
110 ctttcatgcagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagattattaataaca-----agtgatattttgttctat 204  Q
    ||||| |||||||||||||||||||||||||| |||||||||| || |||||||||||||||| |||| |||| | |     |||| | ||||||||| |    
7015738 ctttcttgcagatacacaaggacttactcgaatcaaatgacatttgtaactgtgaaggtaagaaattactaattaaatcattagtgcttttttgttcttt 7015837  T
205 taagaaaaaacaatcaatttggtgaaaacaattaagtgtctttgatgagattgtgcaatttccttacatcaa-ttttcatgtaattaattttgcagggtt 303  Q
    |||||  || || ||||||| ||||||  | |||||  ||||| | | |||| | ||| ||| ||| ||| | |||| || |||||||||||||||||||    
7015838 taagattaa-cactcaatttagtgaaat-atttaagcatctttaaagggattatccaaattcattatatcgacttttgat-taattaattttgcagggtt 7015934  T
304 caggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatg 400  Q
    ||||||||| |||||||||||||||||||||   |||||||   ||||||||||| |||||||||||||| ||||||| ||||| |||| |||||||    
7015935 caggacatacagctcctgagtacactcctgatcaatgttttggcatgttcactaggtggatatctaatttacctttgt-aatcagaagcataagatg 7016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 284 - 410
Target Start/End: Original strand, 7022817 - 7022942
Alignment:
284 gtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaa 383  Q
    ||||||||||||||||||||||||||||| |||||||| | |  |||||||   ||||||| | ||||||||||| ||||||||||||||||||||||||    
7022817 gtaattaattttgcagggttcaggacatacagctcctgcggatgctcctgaacaatgttttgccatgttcactaggtggatatctaatttgcctttgtaa 7022916  T
384 atcaaaagcctaagatggcataaatat 410  Q
    |||||||| || | |||||||||||||    
7022917 atcaaaag-ctgatatggcataaatat 7022942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 7007122 - 7007247
Alignment:
114 catgcagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagattattaataa-----caagtgatattttgttctattaag 208  Q
    ||||||||| |||||||||| ||||||| || ||||||| ||||||||||||||||||| ||||||||| |     |||||| | ||||||||| |||||    
7007122 catgcagatgcacaaggactcactcgaatcacatgacatttgcaactgtgaaggtaagaaattattaattaaatcacaagtgctcttttgttcttttaag 7007221  T
209 aaaaaacaatcaatttggtgaaaaca 234  Q
    |||||||| |||||||||||||||||    
7007222 aaaaaacagtcaatttggtgaaaaca 7007247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 468 - 525
Target Start/End: Original strand, 7058782 - 7058839
Alignment:
468 taatgtcaaggtttcatgtttcagttgtttcctgattctatcttcttcacatcttggc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
7058782 taatgtcaaggtttcatgtttcagttgtttcctgattctatctgcttcacatcttggc 7058839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 7029531 - 7029671
Alignment:
243 tctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctg-agtacactcctgagttatgt 341  Q
    ||||||||| || ||||| | ||  ||| |||||||||   ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||  ||||    
7029531 tctttgatgtgactgtgctaatttgttatatcaatttttgggtaattaattttgcagggttcaggacatacagctcctgcagt-cactcctgagcaatgt 7029629  T
342 tttcctatgttcactagatggatatctaatttgcctttgtaa 383  Q
    ||  | |||||||| || |||| |||||||||||||||||||    
7029630 ttagccatgttcaccaggtggacatctaatttgcctttgtaa 7029671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 7029193 - 7029301
Alignment:
110 ctttcatgcagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagatta-----ttaataacaagtgatattttgttctat 204  Q
    ||||||||||||||||||||||||||||| || | |||||||| |||||||||||||||| || ||||     | ||||||||||||| ||||||| | |    
7029193 ctttcatgcagatacacaaggacttactcaaatcgaatgacatttgcaactgtgaaggtaggaaattactaattaaataacaagtgatcttttgttattt 7029292  T
205 taagaaaaa 213  Q
    |||||||||    
7029293 taagaaaaa 7029301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 468 - 524
Target Start/End: Original strand, 7049867 - 7049923
Alignment:
468 taatgtcaaggtttcatgtttcagttgtttcctgattctatcttcttcacatcttgg 524  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
7049867 taatgtcaaggtttcatgtttaagttgtttcctgattccatcttcttcacatcttgg 7049923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 7022428 - 7022514
Alignment:
97 aatcattaattttc-tttcatgcagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagattattaat 182  Q
    ||||| |||||||| ||||||| |||||||||||||||| ||| || | |||||||| ||||||||||||||||||| |||| ||||    
7022428 aatcaataattttcctttcatgtagatacacaaggacttgctcaaatcgaatgacatttgcaactgtgaaggtaagaaattactaat 7022514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 7006032 - 7006100
Alignment:
114 catgcagatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggtaagagattattaat 182  Q
    ||||||||||||||||||||||||| || |  ||||||| ||||||||||||||||| | |||||||||    
7006032 catgcagatacacaaggacttactccaatcgcatgacatttgcaactgtgaaggtaataaattattaat 7006100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 526
Target Start/End: Original strand, 7042714 - 7042771
Alignment:
468 taatgtcaaggtttcatgtttcagttgtttcctgattctatcttcttcacatcttggct 526  Q
    ||||||||||||| |||||||||||||||| ||||||| || ||| |||||||||||||    
7042714 taatgtcaaggttgcatgtttcagttgttttctgattc-atgttcatcacatcttggct 7042771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 7006282 - 7006334
Alignment:
471 tgtcaaggtttcatgtttcagttgtttcctgattctatcttcttcacatcttg 523  Q
    ||||||||||||||||||||||| |||| |||||   ||||||||||||||||    
7006282 tgtcaaggtttcatgtttcagttttttcgtgatttcgtcttcttcacatcttg 7006334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 5860441 - 5860491
Alignment:
119 agatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggta 169  Q
    |||||||||||||||||||| || || ||||||| ||||||||||||||||    
5860441 agatacacaaggacttactccaatcagatgacatttgcaactgtgaaggta 5860491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 5867079 - 5867129
Alignment:
119 agatacacaaggacttactcgaaccaaatgacatatgcaactgtgaaggta 169  Q
    |||||||||||||||||||| || || ||||||| ||||||||||||||||    
5867079 agatacacaaggacttactccaatcagatgacatttgcaactgtgaaggta 5867129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University