View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20429_low_8 (Length: 430)
Name: NF20429_low_8
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20429_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 7156730 - 7157129
Alignment:
| Q |
17 |
cagagaatgccatgtcaagaagcatctaggatagttttatcattgagagggtaatctaggtgcaaggcggtggggatggaggttacttttgtgannnnnn |
116 |
Q |
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| T |
7156730 |
cagagaatgccatggcaagaagcaactaggatagttttatcattgagagggtaatctaggtgcaaggcagtggggatggaggttacttttgtgaagagag |
7156829 |
T |
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| Q |
117 |
nnnnnnnnnggtaagacatgtggtcgacctcgagtgagaaatgggtgaaacttgagacgaggagacgtgggcgcgtggttgacacatgaaggtgcttttt |
216 |
Q |
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| T |
7156830 |
aggagagagggtaagacatgtggtcgacctcgagtgagaaatgggtgaaacttgagacgaggagacgtgggcgcgtggttgacacatgaaggtgcttttt |
7156929 |
T |
|
| Q |
217 |
ggcgaatttgtgatcggagatgagatatttccattacttacagacgcattggagttgcatcagagacttcacgggaagccgggagagaatctctacaacg |
316 |
Q |
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| T |
7156930 |
ggcgaatttgtgatcgaagatgagagatttccattacttacagacgcattggagttgcatgagagacttcacgggaagccgggagagaatctctacaacg |
7157029 |
T |
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| Q |
317 |
agatcgaatggaagagtcggaagggaatctccaggaatagcagaggaggaagatggtgaagc------tagggttagggtttcagtggagaagctcaatt |
410 |
Q |
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| T |
7157030 |
agatcgaatggaagagtcggaagggaatctccaggaatagcagaggaggaagatggtgaagctagggttagggttagggtttcagtggagaagctcaatt |
7157129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 186 - 338
Target Start/End: Complemental strand, 11237033 - 11236881
Alignment:
| Q |
186 |
ggcgcgtggttgacacatgaaggtgctttttggcgaatttgtgatcggagatgagatatttccattacttacagacgcattggagttgcatcagagactt |
285 |
Q |
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| T |
11237033 |
ggcgcgtggtggacacgtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggtattt |
11236934 |
T |
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| Q |
286 |
cacgggaagccgggagagaatctctacaacgagatcgaatggaagagtcggaa |
338 |
Q |
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| T |
11236933 |
gactggcagcctggagagaatctccgcgacgatctcgaatggaagagtcggaa |
11236881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 348
Target Start/End: Original strand, 7169404 - 7169563
Alignment:
| Q |
189 |
gcgtggttgacacatgaaggtgctttttggcgaatttgtgatcggagatgagatatttccattacttacagacgcattggagttgcatcagagacttcac |
288 |
Q |
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| T |
7169404 |
gcgtggttgacaagcgaaggtgattcttagcgaattttgaatcggagataagagatttccaggacttacagacggattggagttgcatgagaaacttgac |
7169503 |
T |
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| Q |
289 |
gggaagccgggagagaatctctacaacgagatcgaatggaagagtcggaagggaatctcc |
348 |
Q |
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| T |
7169504 |
tggaagcctggagagaatttccgccacaatctcgaatggaagagtgggaaggaaatctcc |
7169563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 339
Target Start/End: Complemental strand, 24722675 - 24722544
Alignment:
| Q |
208 |
gtgctttttggcgaatttgtgatcggagatgagatatttccattacttacagacgcattggagttgcatcagagacttcacgggaagccgggagagaatc |
307 |
Q |
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| T |
24722675 |
gtgctttttggcgaatttaggatgggagatgaatgatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaagcctatagagaatt |
24722576 |
T |
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| Q |
308 |
tctacaacgagatcgaatggaagagtcggaag |
339 |
Q |
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| T |
24722575 |
tctaacacaagatcgaatggaagagtgggaag |
24722544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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