View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20429_low_9 (Length: 405)
Name: NF20429_low_9
Description: NF20429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20429_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 8861788 - 8862168
Alignment:
| Q |
16 |
ctctccacctacaacaactttctcatccaaaccccctaactaccacc---ccgccactgccgttcttacctcagatcttctatgtcttcaatgtacattt |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8861788 |
ctctccacctataacaactttctcatccaaaccccctaacaaccaccaccccgccactgccgttcttacctcagatcttctatgtcttcaatgtacattt |
8861887 |
T |
|
| Q |
113 |
ctagcacaacatcttcatatgggaaactcactcttgctattnnnnnnnnnnnnnnggaaactcattcttattctttttgtaattgttcctgcaacaagtt |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8861888 |
ctagcacaacatcttcgtatgggaaactcactcttgctattaaagaaaaaa----ggaaactcattcttattctttttgtaattgttcctgcaacaagtt |
8861983 |
T |
|
| Q |
213 |
cgctcttcattttcagcattacctgagatgttatgtttgtaagccttatcatggaatggacatgtagggaattcttttttatgttagtttttggtagaaa |
312 |
Q |
| |
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|||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8861984 |
cgctcttcgtttttagcattatttgagatgttatgtttgtaagccttgtcatggaatggacatgtagggaattcttttttatgttagtttttggtagaaa |
8862083 |
T |
|
| Q |
313 |
attttacctttcctgttctctgtatgtaattgtaaacagaaacttttttccaaacaagatattgagttagtcttaatagaataat |
397 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8862084 |
attttaccttttctgttctctgtatgtaattgtaaacagaaacttttttccaaacaagatattgagttagtcttaatagaataat |
8862168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 36828532 - 36828148
Alignment:
| Q |
16 |
ctctccacctacaacaactttctcatccaaaccccctaactaccacccc---gccactgccgttcttacctcagatcttctatgtcttcaatgtacattt |
112 |
Q |
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||||||||||||||||||||||||||| ||||| |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36828532 |
ctctccacctacaacaactttctcatcaaaacctcctaaccaccaccaccgcgccactgccgttcttacctcagatcttctatgtcttcaatgcacattt |
36828433 |
T |
|
| Q |
113 |
ctagcacaacatcttcatatgggaaactcactcttgctattnnnnnnnnnnnnnnggaaactcattcttattctttttgtaattgttcctgcaacaagtt |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
36828432 |
ctagcacaacatcttcatatgggaaactcactcttgctgttaaaaaaaaaaaaaaggaaactcattcttgttctttttgtgattgttcctgcaacaagtt |
36828333 |
T |
|
| Q |
213 |
cgctcttcattttcagcattacctgagatgttatgtttgtaagccttatcatggaatggacatgtagggaattcttttttatgttagtttttggtagaaa |
312 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
36828332 |
cgctattcgttttcagcattacctgagatgttatgtttgtaagccttgtcatggaatggacatgtagggaattcttttttatgttaattttcggtagaaa |
36828233 |
T |
|
| Q |
313 |
attttacctttcctgttctctgtatgtaattgtaaacagaaacttttttccaaacaagatattgagttagtcttaatagaataat |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
36828232 |
attttacctttcctgttctctgtatgtaattgtaaacaaaaacttttttccaaactagatattgagttagtcttaataaaataat |
36828148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 168 - 397
Target Start/End: Complemental strand, 45034298 - 45034081
Alignment:
| Q |
168 |
ggaaactcattcttattctttttgtaattgttcctgcaacaagttcgctcttcattttcagcattacctgagatgttatgtttgtaagccttatcatgga |
267 |
Q |
| |
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|||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |
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| T |
45034298 |
ggaaactcattcttgttttttttgtaattgttcctacaacaagttcgctcttcggtttcagc---------gatgttatgtttgtaagccttgtcatgga |
45034208 |
T |
|
| Q |
268 |
atggacatgtagggaattcttttttatgttagtttttggtagaaaattttacctttcctgttctctgtatgtaattgtaaacagaaacttttttccaaac |
367 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |
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| T |
45034207 |
atggacatgtagggaattcttttttatgttagtttttggtagaaaattttacctttcctgttctc---atgtaattgtaaacaaaaactttttttcaaac |
45034111 |
T |
|
| Q |
368 |
aagatattgagttagtcttaatagaataat |
397 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
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| T |
45034110 |
aagatattgagttactcttaatagaataat |
45034081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 45034381 - 45034335
Alignment:
| Q |
16 |
ctctccacctacaacaactttctcatccaaaccccctaactaccacc |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45034381 |
ctctccacctacaacaactttctcatccaaaccccctaaccaccacc |
45034335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 31517898 - 31517944
Alignment:
| Q |
16 |
ctctccacctacaacaactttctcatccaaaccccctaactaccacc |
62 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || || |||||| |
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| T |
31517898 |
ctctccacctccaacaactttctcatccaaaccctctgaccaccacc |
31517944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 168 - 393
Target Start/End: Complemental strand, 38308404 - 38308182
Alignment:
| Q |
168 |
ggaaactcattcttattct-ttttgtaattgttcctgcaacaagttcgctcttcattttcagcattacctgagatgttatgtttgtaagccttatcatgg |
266 |
Q |
| |
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||||||||| |||| |||| |||||||||||||||||||||||||| ||||| | |||||||||||||||| | ||||||||| |||| || |||||| |
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| T |
38308404 |
ggaaactcactcttgttctattttgtaattgttcctgcaacaagtt-gctctacgttttcagcattacctg---ttttatgtttgcaagcattgtcatgg |
38308309 |
T |
|
| Q |
267 |
aatggacatgtagggaattcttttttatgttagtttttggtagaaaattttacctttcctgttctctgtatgtaattgtaaacagaaacttttttccaaa |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||||| |
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| T |
38308308 |
aatggacatgtagggaattcttttttatgtcagtttttgatagaaaattttacctgtcatgttctatgtatgtaattgtaaacagaaactattttccaaa |
38308209 |
T |
|
| Q |
367 |
caagatattgagttagtcttaatagaa |
393 |
Q |
| |
|
|||||||| |||||||||||||||||| |
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| T |
38308208 |
caagatatcgagttagtcttaatagaa |
38308182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 38269604 - 38269546
Alignment:
| Q |
186 |
tttttgtaattgttcctgcaacaagttcgctcttcattttcagcattacctgagatgtt |
244 |
Q |
| |
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||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
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| T |
38269604 |
tttttgttattgttcctgcaacatgtttgctcttcattttcagcattacctgaaatgtt |
38269546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 38308431 - 38308390
Alignment:
| Q |
107 |
acatttctagcacaacatcttcatatgggaaactcactcttg |
148 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
38308431 |
acatttctagcacaacatctgcatattggaaactcactcttg |
38308390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 31706437 - 31706489
Alignment:
| Q |
186 |
tttttgtaattgttcctgcaacaagttcgctcttcattttcagcattacctga |
238 |
Q |
| |
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|||||||||| |||||||||||| || ||| |||||||||||||| |||||| |
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| T |
31706437 |
tttttgtaatggttcctgcaacatgtctgcttttcattttcagcatcacctga |
31706489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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