View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2042_high_4 (Length: 442)
Name: NF2042_high_4
Description: NF2042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2042_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 43488842 - 43488438
Alignment:
| Q |
17 |
catgtgttaggtttaataaatttggaaggagttttcctgttttgtttcaagctgaagctatgaaagagatgctgaaaaagagtaaaatggaagggagaag |
116 |
Q |
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| T |
43488842 |
catgtgttaggtttaataaatttggaaggagttttcctgttttgtttcaagctgaagctatgaaagagatgctgaaaaagagtaaaatggaagggagaag |
43488743 |
T |
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| Q |
117 |
ggctaagtcattcaaccctagagacaaaggtggtgaaaagaaaggtggtgggcttgctagaagttcaagttgcattcctgctattacaagagatatcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43488742 |
ggctaagtcattcaaccctagagacaaaggtggtgaaaagaaaggtggtgggcttgctagaagttcaagttgcattcctgctattacaagagatatcaat |
43488643 |
T |
|
| Q |
217 |
gatttcacaatcaccaattaatcttatcttataacatagaagttaaccgtatgtttgaattgatggtaagtttaatagaatctcagtgagtcaccgtaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43488642 |
gatttcacaatcaccaattaatcttatcttataacatagaagttaaccgtatgtttgaattgatggtaagtttaatagaatctcagcgagtcaccgtaat |
43488543 |
T |
|
| Q |
317 |
tttattcaataatattacggtaagaccaccatgatttcatcaactcaacgtgatttcagacatgcattaagtgttttaattctgtattgattaattctat |
416 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43488542 |
tttattcaataatattacggtgagaccatcatgatttcatcaactcaacgtgatttcagacatgcattaagtgttttaattctgtattgattaattctat |
43488443 |
T |
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| Q |
417 |
gttgt |
421 |
Q |
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| T |
43488442 |
gttgt |
43488438 |
T |
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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 4346530 - 4346625
Alignment:
| Q |
17 |
catgtgttaggtttaataaatttggaaggagttttcctgttttgtttcaagctgaagctatgaaagagatgctgaaaaagagtaaaatggaaggga |
112 |
Q |
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||||||||| |||||| |||| ||| ||| |||||| |||||||||||||| ||||||||||||| ||| ||||||||||||| ||||| |||| |
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| T |
4346530 |
catgtgttaagtttaacaaatatggtagggcttttccagttttgtttcaagcacaagctatgaaagaaatgttgaaaaagagtaacatggatggga |
4346625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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