View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2042_high_5 (Length: 250)
Name: NF2042_high_5
Description: NF2042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2042_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 28310701 - 28310471
Alignment:
| Q |
20 |
ctttaaatttgtgtctaatatcacacacctccgttaagttgataagaaaaagaataatcacttttttccccttctttatccttgtgttcttattagagaa |
119 |
Q |
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| T |
28310701 |
ctttaaatttgtgtctaatatcacacacctccgttgagttgataagaaaaagaataatcacttttttccccttctttatccttgtgttctttttagagaa |
28310602 |
T |
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| Q |
120 |
acataacattgaactctagcaatttgagattgcttgtgttggggagttgagtgtaattgacatgtgtgataacaagtggcaattatattgaacaatcaac |
219 |
Q |
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| T |
28310601 |
acataacattgaactctagcaatttgagattgcttgtgttggggagttgagtgtaattgacatgtgtgataacaagtgggaattatattgaacaatcaac |
28310502 |
T |
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| Q |
220 |
aatggtcctaggagtcaacatgcatgtttct |
250 |
Q |
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| T |
28310501 |
aatggtcctaggagtcaacgtgcatgtttct |
28310471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 28305728 - 28305500
Alignment:
| Q |
20 |
ctttaaatttgtgtctaatatcacacacctc---cgttaagttgataagaaaaagaataatcacttttttccccttctttatccttgtgttcttattaga |
116 |
Q |
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| T |
28305728 |
ctttaaatttgtgtcaaatatcacacacctcatccgttatgttaataagaaaaagaag--tcactttgttttcgt-ctttttccttttgttttattttta |
28305632 |
T |
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| Q |
117 |
gaaacataacattgaactctagcaatttgagattgcttgtgttggggagttgagtgtaattgacatgtgtgataacaagtggcaattatattgaacaatc |
216 |
Q |
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| T |
28305631 |
gaaacacaacattgaactctagcaatttgagattgcatgtgttggagagttgagtataattgacatgtgtgataactaatgacaattatattgaacaatc |
28305532 |
T |
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| Q |
217 |
aacaatggtcctaggagtcaacatgcatgttt |
248 |
Q |
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| T |
28305531 |
aacaatggtcgtatgagtcaacatgcatgttt |
28305500 |
T |
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