View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2042_low_5 (Length: 290)
Name: NF2042_low_5
Description: NF2042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2042_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 38894822 - 38895083
Alignment:
| Q |
19 |
gagacatccaaagagataaacctgacctagatgtttgattagttgtttcatggtttgtgcatgagattggtttgaaaattgaagaaaaatgagttcctgt |
118 |
Q |
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| T |
38894822 |
gagacatccaaagagataaacctgacctagatgtttgattagttgtttcatggtttgtgcatgagattggtttgaaaattgaagaaaaatgagttcctat |
38894921 |
T |
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| Q |
119 |
gttagggacaagagaattttgcataatgttgtaattaccaatgttgttacctcccattcctaataatgagttgtttatgtttgttgatccatttattcta |
218 |
Q |
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| T |
38894922 |
gttagggacaagagaattttgcataatgttgtaattaccaatgttgttacctcccattcctaataatgagttgtttatgtttgttgatccatttattcta |
38895021 |
T |
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| Q |
219 |
gctgtttcttctgctaaggcatcacaaaatgccctgtgagtgacaaagctatcccttctgtg |
280 |
Q |
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| T |
38895022 |
gctgtttcttctgctaaggcatcacaaaatgccctgtgagtgacaaagctatccctcctgtg |
38895083 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 30517340 - 30517380
Alignment:
| Q |
219 |
gctgtttcttctgctaaggcatcacaaaatgccctgtgagt |
259 |
Q |
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| T |
30517340 |
gctgtttcttctgctaaggcatcacaaaaggctctgtgagt |
30517380 |
T |
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