View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2042_low_9 (Length: 233)
Name: NF2042_low_9
Description: NF2042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2042_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 45196607 - 45196834
Alignment:
| Q |
1 |
taagcaagagtggttcataatgcttgtagctattgttccttcnnnnnnnnnnnnntgcttgtagctattgcaaaaatgtcatttatacgnnnnnnncccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
45196607 |
taagcaagagtggttcataatgcttgtagctattgttccttcaaaaaaaaaaaa-tgcttgtagctattgcaaaaatgtcatttatacttttttt--ccc |
45196703 |
T |
|
| Q |
101 |
gcatatttaaaacctttttatatgaatttgacttattcgtgtgattgaaaataatgaattgattttgttataaaaatattacaatgaattgattcaaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45196704 |
gcatatttaaaacctttttatatgaatttgacttattcgtgtgattgaaaacaatgaattgattttgttataaaaatattacaatgaattgattcaaatg |
45196803 |
T |
|
| Q |
201 |
ttaagaggtttggacctcttaaataaatgat |
231 |
Q |
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||||||||||||| || ||||||||||||| |
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| T |
45196804 |
ataagaggtttggatcttttaaataaatgat |
45196834 |
T |
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