View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20430_high_16 (Length: 237)
Name: NF20430_high_16
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20430_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45562666 - 45562447
Alignment:
| Q |
1 |
cactccacatcaatctaacccaacctactaaatcagtaccctccataaatgatggatctgctaccttctttctggttatcagctcaagcaaaactactcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45562666 |
cactccacatcaatctaacccaacctactaaatcagtaccctccataaatgatggatctgctaccttctttctggttatcagctcaagcaaaactactcc |
45562567 |
T |
|
| Q |
101 |
atagctgtacacatcacactccctactacttactgttgtataagcattctctgtcacaagccaacaaaaacatgttgatcatccatatgagaattttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45562566 |
atagctgtacacatcacactccctactacttactgttgtataagcattctctgtcacaagccaacaaaaacatgttaatcatccatatgagaattttgaa |
45562467 |
T |
|
| Q |
201 |
aagaaaagaaacattcaatc |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45562466 |
aagaaaagaaacattcaatc |
45562447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 40542661 - 40542547
Alignment:
| Q |
42 |
tccataaatgatggatctgctaccttctttctggttatcagctcaagcaaaactactccatagctgtacacatcacactccctactacttactgttgtat |
141 |
Q |
| |
|
|||||||||||||||| | | |||||||||| | ||||| ||||||||||||||||||||| ||||| |||||| ||||| | | |||||||||||| |
|
|
| T |
40542661 |
tccataaatgatggatttattgccttctttcttgatatcaactcaagcaaaactactccataactgtatacatcagactcctttcccattactgttgtat |
40542562 |
T |
|
| Q |
142 |
aagcattctctgtca |
156 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
40542561 |
atgcattctctgtca |
40542547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 36866832 - 36866782
Alignment:
| Q |
66 |
ttctttctggttatcagctcaagcaaaactactccatagctgtacacatca |
116 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||||| || |||||| |
|
|
| T |
36866832 |
ttctttctggttattagctcgagcaaaacaactccatagctatatacatca |
36866782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 37832628 - 37832578
Alignment:
| Q |
66 |
ttctttctggttatcagctcaagcaaaactactccatagctgtacacatca |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||| || |||||| |
|
|
| T |
37832628 |
ttctttctggttattagctcaagcaaaacaactccgtagctatatacatca |
37832578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 37845610 - 37845560
Alignment:
| Q |
66 |
ttctttctggttatcagctcaagcaaaactactccatagctgtacacatca |
116 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| |||||||| |||||| |
|
|
| T |
37845610 |
ttctttctggttattagctcgagcaaaacaactccgtagctgtatacatca |
37845560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University