View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20430_high_7 (Length: 331)
Name: NF20430_high_7
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20430_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 13410165 - 13409861
Alignment:
| Q |
19 |
catgtcagaggttccttgaaccggccgctgcggtgttccagaaggaaccgcggaggccggaaaagactgaagttgtggttgttgttgcggtggcggcggc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13410165 |
catgtcagaggttccttgaaccggccgctgcggtgttccagaaggaaccgcagtggccggaaaagactgaagttgtggttgttgttgcggtggcggcggc |
13410066 |
T |
|
| Q |
119 |
ataattgatctaacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13410065 |
ataattgatctaacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgt |
13409966 |
T |
|
| Q |
219 |
cgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtatcgtctcct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13409965 |
cgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtatcgtctcct |
13409866 |
T |
|
| Q |
319 |
ttgct |
323 |
Q |
| |
|
||||| |
|
|
| T |
13409865 |
ttgct |
13409861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 162 - 294
Target Start/End: Complemental strand, 10554739 - 10554607
Alignment:
| Q |
162 |
ttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctct |
261 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| || || || || ||||| |||||| | |||| | |||||||| |
|
|
| T |
10554739 |
ttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttttttaggatctct |
10554640 |
T |
|
| Q |
262 |
tatttctgctgcccattttccccatggtctttg |
294 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |
|
|
| T |
10554639 |
tatttcagctgcccatttcccccaaggtctttg |
10554607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 130 - 311
Target Start/End: Original strand, 44331736 - 44331917
Alignment:
| Q |
130 |
aacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcct |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||||||| || || |||||||| |
|
|
| T |
44331736 |
aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca |
44331835 |
T |
|
| Q |
230 |
agccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtatc |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44331836 |
agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgtcttactcctctgtatc |
44331917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 129 - 310
Target Start/End: Original strand, 38653101 - 38653282
Alignment:
| Q |
129 |
taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| || | ||||| ||||| |||||| || |||||||| |||| ||||| || ||||| || |
|
|
| T |
38653101 |
taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc |
38653200 |
T |
|
| Q |
229 |
tagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtat |
310 |
Q |
| |
|
|| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
38653201 |
taaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtcttactcctctgtat |
38653282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 129 - 310
Target Start/End: Original strand, 43490025 - 43490206
Alignment:
| Q |
129 |
taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc |
228 |
Q |
| |
|
|||||||||||||||| |||||||| ||| || | ||||| || | | |||||||||||||| || ||||| || ||||| ||||| || |||||||| |
|
|
| T |
43490025 |
taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgttcc |
43490124 |
T |
|
| Q |
229 |
tagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtat |
310 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
43490125 |
taaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtat |
43490206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 45013877 - 45013979
Alignment:
| Q |
135 |
tttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcctagcca |
234 |
Q |
| |
|
||||||| || ||||| || ||| |||||||| ||||||| | ||||||||||||||| || |||||||| || || || || |||||||||||||| |
|
|
| T |
45013877 |
tttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagcca |
45013976 |
T |
|
| Q |
235 |
tac |
237 |
Q |
| |
|
||| |
|
|
| T |
45013977 |
tac |
45013979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 6583157 - 6583050
Alignment:
| Q |
199 |
agctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctc |
298 |
Q |
| |
|
||||||| |||| |||||||| |||||||||| ||| ||||| |||||| | ||| || | |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6583157 |
agctgcatcttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctttgtctc |
6583058 |
T |
|
| Q |
299 |
actcctct |
306 |
Q |
| |
|
|||||||| |
|
|
| T |
6583057 |
actcctct |
6583050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 6568998 - 6568891
Alignment:
| Q |
199 |
agctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctc |
298 |
Q |
| |
|
||||||| |||| ||||| || |||||||||| ||| ||||| |||||| | ||| || | |||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
6568998 |
agctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctctgtctc |
6568899 |
T |
|
| Q |
299 |
actcctct |
306 |
Q |
| |
|
|||||||| |
|
|
| T |
6568898 |
actcctct |
6568891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 33750479 - 33750433
Alignment:
| Q |
263 |
atttctgctgcccattttccccatggtctttgtctcactcctctgta |
309 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33750479 |
atttcagcagcccatttaccccatggtctttgtctcactcctctgta |
33750433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 33718997 - 33718963
Alignment:
| Q |
272 |
gcccattttccccatggtctttgtctcactcctct |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
33718997 |
gcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 33721016 - 33720979
Alignment:
| Q |
272 |
gcccattttccccatggtctttgtctcactcctctgta |
309 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |
|
|
| T |
33721016 |
gcccattttccccatggtctctgcctcactcctctgta |
33720979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University