View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20430_high_9 (Length: 308)

Name: NF20430_high_9
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20430_high_9
NF20430_high_9
[»] chr8 (1 HSPs)
chr8 (1-291)||(34975485-34975775)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 34975485 - 34975775
Alignment:
Q  1 atactcaggttgaataatcaccaatgcaatttcccctttcttcatgttcttcacggctctatcaagcccatcaattacttgctctagcgcatggaagata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34975485 atactcaggttgaataatcaccaatgcaatttcccctttcttcatgttcttaacggctctatcaagcccatcaattacttgctctagcgcatggaagata 34975584  T
Q  101 caaattagaattattttggaaagaaagggtttactctagtaacctatttaagagtataagctaaaacttaaaaccaatgtttaaagtaccttcatcaatt 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34975585 cagattagaattattttggaaagaaagggtttactctagtaacctattgaagagtataagctaaaacttaaaaccaatgtttaaagtaccttcatcaatt 34975684  T
Q  201 ctgaactcaaatggctgatcaccatcatgacctttcttaaagaagacagtcccatcttgcagctttccggtaagtttcactgaatcaatgg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34975685 ctgaactcaaatggctgatcaccatcatgacctttcttaaagaagacagtcccatcttgcagctttccggtaagtttcactgaatcaatgg 34975775  T

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