View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20430_low_1 (Length: 571)
Name: NF20430_low_1
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20430_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 70 - 254
Target Start/End: Original strand, 50626006 - 50626190
Alignment:
| Q |
70 |
gcattatataacaatctaactatcccgcgaaaataattgttaaattttatttttggttacttaaaaagggtcggaacttcgcaggaggtcacccatccaa |
169 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50626006 |
gcattatataacaatctaactattccgcaaaaataattgttaaattttatttttggttacttaaaaagggtcggaacttcgcaggaggtcacccatctta |
50626105 |
T |
|
| Q |
170 |
ataatatactctcgtccaaacacacttaactacgaaattgtgatggaattcgatgcattagtactagtatgatcacacctataat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
50626106 |
ataatatactctcgtccaaacacacttaactacaaaattgtgatggaatctaatgcattagtactagaatgatcacacctataat |
50626190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 428 - 557
Target Start/End: Original strand, 50631219 - 50631348
Alignment:
| Q |
428 |
taaattcccacttcaatgttggtgtgactcttgccagtttcagttgagatacaatcatgccaatttggactgtatatatagataagtgctatggaatagc |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50631219 |
taaattcccacttcaatgttggtgtgactcttgccagtttcagttgagatacaatcatgccaatttggactgtatatatagataagtgctatggaatagc |
50631318 |
T |
|
| Q |
528 |
tatagacatgtgattcttcctctcactatc |
557 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
50631319 |
tatagacatgtgattcttcatctcactatc |
50631348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 50630989 - 50631102
Alignment:
| Q |
248 |
ctataatgaaatatgaccattatatgagatatgaatatctgtatttacaattgaagtatgtataatttttaaactcaaaatgaagaaatttttaaataaa |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50630989 |
ctataatgaaatatgaccattatatgagatatgaatatctgtatttacaattgaagtatg--taatttttaaactcaaaatgaagaaatttttaaataaa |
50631086 |
T |
|
| Q |
348 |
atgcacattgttgtgt |
363 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
50631087 |
atgcacattgttgtgt |
50631102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 24620777 - 24620882
Alignment:
| Q |
145 |
acttcgcaggaggtcacccatccaaataata-tactctcgtccaaacacacttaactacgaaattgtgatggaattcgatgcattagtactagtatgatc |
243 |
Q |
| |
|
||||| |||||||||||||||||| || || |||||||| |||| ||| ||||||| || | || |||||| || || ||||||||| || |||||||| |
|
|
| T |
24620777 |
acttcccaggaggtcacccatccanctagtactactctcgcccaagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatc |
24620876 |
T |
|
| Q |
244 |
acacct |
249 |
Q |
| |
|
||||| |
|
|
| T |
24620877 |
gcacct |
24620882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University