View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20430_low_11 (Length: 296)
Name: NF20430_low_11
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20430_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 80 - 289
Target Start/End: Complemental strand, 31754346 - 31754137
Alignment:
| Q |
80 |
catatcctaatacatagtactcctcaaattaattagcatcgagtgacatattgcttacgacattattatgtgtaagtaaacatgtttgaaataatgcaaa |
179 |
Q |
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| T |
31754346 |
catatcctaatacatagtactcctcaaattaattagcaccgagtgacatattgcttacgacattattatgtgtaagtaaacatgtttgaaataatgcaaa |
31754247 |
T |
|
| Q |
180 |
tattgattcatgtcgataagcttcaattattctttggtgggaggctgacaagttccttttgtttctcttttttccctttctgattcctaaggccacatac |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31754246 |
tattgattcatgtcgataagcttcaattattctttggtgggaggctgacaagttccttttgtttctcttttttccctttctgattcctaaggccacatac |
31754147 |
T |
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| Q |
280 |
attcttctca |
289 |
Q |
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|||||||||| |
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| T |
31754146 |
attcttctca |
31754137 |
T |
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