View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20430_low_18 (Length: 236)
Name: NF20430_low_18
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20430_low_18 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8854983 - 8855202
Alignment:
| Q |
1 |
attgataatgggatgatatggataaaggatagggcttttatggtatttcatgagattggaggatcctgtttcggatttttgaaatcaaaacaaatacaat |
100 |
Q |
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| T |
8854983 |
attgataatgggatgatatggataaaggatagggcttttatggtatttcatgagattggaggatcctgttt-ggatttttgaaatcaaaacaaatacaat |
8855081 |
T |
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| Q |
101 |
tttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctacttgcaatttcatcaatattcgggattat |
200 |
Q |
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| T |
8855082 |
tttagcaagtttattaatttataccgaagtaataatttaatttgtatctacgaggattgttatgatctctacttgcaatttcatcaacattcgggattgt |
8855181 |
T |
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| Q |
201 |
ttgtaaatggggggttgttat |
221 |
Q |
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| T |
8855182 |
ttgaaaatggagggttgttat |
8855202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 28957369 - 28957270
Alignment:
| Q |
94 |
atacaattttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatattc |
192 |
Q |
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| T |
28957369 |
atacaattttagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggactgttctaatctctacttggcaatttcattaatattc |
28957270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 24285 - 24189
Alignment:
| Q |
102 |
ttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctacttg-caatttcatcaatattcgggat |
197 |
Q |
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| T |
24285 |
ttagcaagtgtattaatttatatcgaagtaataatttaattcgtatccacaaggactgttctaatctctacttgacaatttcatcaatattcaggat |
24189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 17544583 - 17544679
Alignment:
| Q |
102 |
ttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctacttg-caatttcatcaatattcgggat |
197 |
Q |
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| T |
17544583 |
ttagcaagtgtactaatttatatcgaagtaataatttaatttgtatccacaaggactgttccaatctctacttgacaatttcatcaatattcaggat |
17544679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 23049316 - 23049226
Alignment:
| Q |
102 |
ttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatatt |
191 |
Q |
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| T |
23049316 |
ttagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggactattctaatctctacttagcaatttcattaatatt |
23049226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 6374830 - 6374731
Alignment:
| Q |
94 |
atacaattttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatattc |
192 |
Q |
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| T |
6374830 |
atacaattttagcaagtatactaatttatatcgaagtaataatttaattcgtatccaaagggactgttctaatctctacttggcaatttcattaatattc |
6374731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 18973685 - 18973775
Alignment:
| Q |
102 |
ttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatatt |
191 |
Q |
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| T |
18973685 |
ttagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggactgttctaatctctacttagcaatttcattaatatt |
18973775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 232083 - 231984
Alignment:
| Q |
94 |
atacaattttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatattc |
192 |
Q |
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| T |
232083 |
atacaattttagcaagtgtactaatttatttcaaagcaataattaaatttgtatccacaaggactactctaatttctacttggcaatttcatcaatattc |
231984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 7570686 - 7570596
Alignment:
| Q |
102 |
ttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatatt |
191 |
Q |
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|||| ||||||| ||||||||| | |||||||||||||||| |||| || |||| |||| | |||||||||| | |||||||| |||||| |
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| T |
7570686 |
ttagcaagtgtactaatttatatcgaagtaataatttaattcgtattcacagggactgttctaatctctacttagaaatttcattaatatt |
7570596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 7577101 - 7577011
Alignment:
| Q |
102 |
ttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatatt |
191 |
Q |
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|||| ||||||| ||||||||| | |||||||||||||||| |||| || |||| |||| | |||||||||| | |||||||| |||||| |
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| T |
7577101 |
ttagcaagtgtactaatttatatcgaagtaataatttaattcgtattcacagggactgttctaatctctacttagaaatttcattaatatt |
7577011 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 21557358 - 21557457
Alignment:
| Q |
94 |
atacaattttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatattc |
192 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| || |||||||| |||||||||| |||| || | || | |||||||||| |||||||||| ||||||| |
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| T |
21557358 |
atacaattttagtaagtgtactaaattatatagaattaataattaaatttgtatccacggtgactattttaatctctacttagcaatttcattaatattc |
21557457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 31375966 - 31375877
Alignment:
| Q |
102 |
ttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctacttg-caatttcatcaatat |
190 |
Q |
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|||| ||||||| ||||||||| | |||||||||||||||| ||||| || ||| |||| | ||||||||||| || |||||||||||| |
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| T |
31375966 |
ttagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacaaggactgttctaatctctacttgacagtttcatcaatat |
31375877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 20473369 - 20473459
Alignment:
| Q |
102 |
ttagtaagtgtattaatttataccaaagtaataatttaatttgtatcaacggggattgttatgatctctactt-gcaatttcatcaatatt |
191 |
Q |
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|||| ||||| | ||||||||| | |||||||||||||||| |||| || |||| |||| | |||||||||| |||||||||| |||||| |
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| T |
20473369 |
ttagcaagtgcactaatttatatcgaagtaataatttaattcatatccacagggactgttctaatctctacttagcaatttcattaatatt |
20473459 |
T |
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