View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20430_low_2 (Length: 420)
Name: NF20430_low_2
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20430_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 15192250 - 15192633
Alignment:
| Q |
18 |
gttaccattctaaagggacctgtaagtgtttcaactgggattacagaaaatattctgagggagcttttcgaaataaatgaggaaaatgttttttgtgatg |
117 |
Q |
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| T |
15192250 |
gttaccattctaaagggacctgtaagtgtttcaactgggattacagaaaatattctgagggagcttttcgaaataaatgaggaaaatgttttttgtgatg |
15192349 |
T |
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| Q |
118 |
ctacgtttggccggtataaagcacttgttgattgcacgattcaaggtagcaagacattctattttagttcaacctttagctgctaagtgtgttgattcat |
217 |
Q |
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| T |
15192350 |
ctacgtttggccggtataaagcacttgttgattgcacgattcaaggtagcaagacattctattttagttcaacctttagctgctaagtgtgttgattcat |
15192449 |
T |
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| Q |
218 |
ggcaatgttcatataaagaatgtcaatggcttaagccataattaatttggatttgtaagaatcaaactcgaaactcgaaactccttggtcaatgtctgct |
317 |
Q |
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| T |
15192450 |
ggcaatgttcatataaagaatgtcaatggcttaagccataattaatttggatttgtaagaatc-------aaactcgaaactccttggtcaatgtctgct |
15192542 |
T |
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| Q |
318 |
agaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtccat |
408 |
Q |
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| T |
15192543 |
agaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtccat |
15192633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 15212310 - 15212493
Alignment:
| Q |
20 |
taccattctaaagggacctgtaagtgtttcaactgggattacagaaaatattctgagggagcttttcgaaataaatgaggaaaatgttttttgtgatgct |
119 |
Q |
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| T |
15212310 |
taccattctaaagggacctgtaagcttttcaactggaattacatgaaatattttgagggagttttttgaaataaatgaggaaaattctttttgtgctgcg |
15212409 |
T |
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| Q |
120 |
acgtttggccggtataaagcacttgttgattgcacgattcaaggtagcaagacattctattttagttcaacctttagctgctaagtgtgtt |
210 |
Q |
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| T |
15212410 |
aagtttggcgggtataaagaacttgttgat-------ttcaaggtagcaagacattctattttagttcaatctttggctgctaagtgtgtt |
15212493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 15212560 - 15212614
Alignment:
| Q |
236 |
aatgtcaatggcttaagccataattaatttggatttgtaagaatcaaactcgaaa |
290 |
Q |
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| T |
15212560 |
aatgtcaatggcttaagccataattaatttggatgtggaagaaccaaactcgaaa |
15212614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 15212644 - 15212736
Alignment:
| Q |
312 |
tctgctagaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtcc |
406 |
Q |
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| T |
15212644 |
tctgctataaatgctaattgtcattatcagcctttgtcaaactagccgacgttcat--gccaataagggaattattgctgcatatggcagtgtcc |
15212736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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