View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20430_low_5 (Length: 340)
Name: NF20430_low_5
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20430_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 52951463 - 52951328
Alignment:
| Q |
1 |
tatcaaaacaaccaaagaatatatatattaccttgaaaattcttatgatttaaacaaacaaaaatcatgacaaactgtgggataaaactatagtctctct |
100 |
Q |
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| T |
52951463 |
tatcaaaacaaccaaagaatatatatattaccttgaaaattcttataatttaaacaaacaaaaatcatgacaaactgtgggataaaactatagtctctct |
52951364 |
T |
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| Q |
101 |
ccattgaagcatatggtgtgttacaaccaatcatat |
136 |
Q |
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| T |
52951363 |
ccattgaagcatatggtgtgttacaaccaatcatat |
52951328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 189 - 331
Target Start/End: Complemental strand, 52951275 - 52951133
Alignment:
| Q |
189 |
caatgcatagaaaccataagataaaacaacaacaaaagatcaatgtttgcaaatagctgcttaagagaactctccgcttcatagattcatttgtgagcac |
288 |
Q |
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| T |
52951275 |
caatgcatagaaaccataagataaaacaacaacaaaagatcaatgtttgcaaatagttgcttaagagaactctccgcttcatagattcatttgtgagcac |
52951176 |
T |
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| Q |
289 |
catctgtactttttactgcgtcaacaacctcttgtgcctttgc |
331 |
Q |
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| T |
52951175 |
catctgtactttttactgcgtcagcaacctctcgtgcctttgc |
52951133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 6463839 - 6463923
Alignment:
| Q |
240 |
aatagctgcttaagagaactctccgcttcatagattcatttgtgagcaccatctgtactttttactgcgtcaacaacctcttgtg |
324 |
Q |
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| T |
6463839 |
aatagctacttaagagagctccccaccacatagattcatttgtgagcaccatctgtactctttacagcatcagcagcctcttgtg |
6463923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 6453126 - 6453203
Alignment:
| Q |
248 |
cttaagagaactctccgcttcatagattcatttgtgagcaccatctgtactttttactgcgtcaacaacctcttgtgc |
325 |
Q |
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| T |
6453126 |
cttaagagagctccccgctacatagattcatttgtgagcaccaactgtaatctttgcagcatcagcaacctcttgtgc |
6453203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 6463601 - 6463633
Alignment:
| Q |
22 |
tatatattaccttgaaaattcttatgatttaaa |
54 |
Q |
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| T |
6463601 |
tatatattaccttgaaaattcttatgatttaaa |
6463633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 6452891 - 6452921
Alignment:
| Q |
24 |
tatattaccttgaaaattcttatgatttaaa |
54 |
Q |
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| T |
6452891 |
tatattaccttgaaaattcttatgatttaaa |
6452921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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