View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20430_low_8 (Length: 317)

Name: NF20430_low_8
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20430_low_8
NF20430_low_8
[»] scaffold0183 (2 HSPs)
scaffold0183 (58-242)||(21385-21569)
scaffold0183 (239-307)||(21182-21250)
[»] chr8 (2 HSPs)
chr8 (59-243)||(15060505-15060688)
chr8 (239-307)||(15060822-15060890)
[»] chr6 (1 HSPs)
chr6 (239-304)||(21750107-21750172)
[»] chr5 (2 HSPs)
chr5 (239-307)||(29885109-29885179)
chr5 (239-307)||(29901685-29901755)
[»] chr7 (2 HSPs)
chr7 (63-130)||(4892931-4892998)
chr7 (239-307)||(36898839-36898910)
[»] scaffold0505 (1 HSPs)
scaffold0505 (59-130)||(12142-12213)
[»] chr3 (1 HSPs)
chr3 (59-130)||(13087226-13087297)
[»] chr2 (1 HSPs)
chr2 (59-108)||(13038171-13038220)
[»] scaffold0022 (1 HSPs)
scaffold0022 (59-107)||(153283-153331)
[»] scaffold0001 (1 HSPs)
scaffold0001 (59-130)||(5465-5537)


Alignment Details
Target: scaffold0183 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 21569 - 21385
Alignment:
Q  58 tatataaagtccaagatctaactacctttcgtaatggatttgttcggtttggtattctgaacgtgttggatttttcacggttgcggtttcggaaaatggg 157  Q
    |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  21569 tatataaagtcctagatctaactacctttcgtaatggatttgtttgatttggtattctggacgtgttggatttttcacggttgcgttttcggaaaatggg 21470  T
Q  158 ttgtatggctggatttgggtttatggtgaaacggttacgatgttcggtgatcgatggtatcgggttttggaaatatgatggtgat 242  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||||| |||||||    
T  21469 ttgtatggctggatttgggtttatggtgaatcggttacgatgttcggtgatcgttggtgttgggttttggaaatatggtggtgat 21385  T

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Target: scaffold0183; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 21250 - 21182
Alignment:
Q  239 tgatgattcgatgatggtgtatgacgagggtttgagaagttttgatgatttgtgattaccggttttctt 307  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  21250 tgatgatttgatgatggtgtgtgacgagggtttgagaagttttgatgatttgtgattagtggttttctt 21182  T

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Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 59 - 243
Target Start/End: Original strand, 15060505 - 15060688
Alignment:
Q  59 atataaagtccaagatctaactacctttcgtaatggatttgttcggtttggtattctgaacgtgttggatttttcacggttgcggtttcggaaaatgggt 158  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||| |||||||||    
T  15060505 atataaagtcctagatctaactacctttcgtaatggatttgtttggtatggtattctggacgtgttggatttttcactgttgcggtttcgaaaaatgggt 15060604  T
Q  159 tgtatggctggatttgggtttatggtgaaacggttacgatgttcggtgatcgatggtatcgggttttggaaatatgatggtgatg 243  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| |||||| | |||| | |||||||||||||||| ||||||||    
T  15060605 tgtatggctggattt-ggtttatggtgaatcggttacgatgtttggtgattgctggtgttgggttttggaaatatggtggtgatg 15060688  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 15060822 - 15060890
Alignment:
Q  239 tgatgattcgatgatggtgtatgacgagggtttgagaagttttgatgatttgtgattaccggttttctt 307  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15060822 tgataattcgatgatggtgtatgacgagggtttgagaagttttgatgatttgtgattactggttttctt 15060890  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 21750107 - 21750172
Alignment:
Q  239 tgatgattcgatgatggtgtatgacgagggtttgagaagttttgatgatttgtgattaccggtttt 304  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  21750107 tgatgattcgatgatggtgtatgataagggtttgagaggttttgatgatttgtgattaccggtttt 21750172  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 29885179 - 29885109
Alignment:
Q  239 tgatgattcgatgatggtgtatgacgagggttt--gagaagttttgatgatttgtgattaccggttttctt 307  Q
    |||||||||||||||||||| ||| ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  29885179 tgatgattcgatgatggtgtgtgatgagggtttgagagaggttttgatgatttgtgattactggttttctt 29885109  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 29901755 - 29901685
Alignment:
Q  239 tgatgattcgatgatggtgtatgacgagggttt--gagaagttttgatgatttgtgattaccggttttctt 307  Q
    |||||||||||||||||||| ||| ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  29901755 tgatgattcgatgatggtgtgtgatgagggtttgagagaggttttgatgatttgtgattactggttttctt 29901685  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 4892931 - 4892998
Alignment:
Q  63 aaagtccaagatctaactacctttcgtaatggatttgttcggtttggtattctgaacgtgttggattt 130  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||   ||||| |||||||||||||    
T  4892931 aaagtcctagatctaactacctttcgtagtggatttgtttggtttgaggttctggacgtgttggattt 4892998  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 36898910 - 36898839
Alignment:
Q  239 tgatgattcgatgatggtgtatgacgagggttt--gagaagttttgat-gatttgtgattaccggttttctt 307  Q
    |||||||||||||||||||| ||| ||||||||  |||| |||||||| ||||||||||||| ||| |||||    
T  36898910 tgatgattcgatgatggtgtgtgatgagggtttgagagaggttttgatagatttgtgattactggtcttctt 36898839  T

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Target: scaffold0505 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 12213 - 12142
Alignment:
Q  59 atataaagtccaagatctaactacctttcgtaatggatttgttcggtttggtattctgaacgtgttggattt 130  Q
    ||||||||| | ||||||||||||||||| || |||||||||| ||||||   ||||| |||||||||||||    
T  12213 atataaagttctagatctaactacctttcatagtggatttgtttggtttgaggttctggacgtgttggattt 12142  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 13087297 - 13087226
Alignment:
Q  59 atataaagtccaagatctaactacctttcgtaatggatttgttcggtttggtattctgaacgtgttggattt 130  Q
    ||||||||| | ||||||||||||||||| || |||||||||| ||||||   ||||| |||||||||||||    
T  13087297 atataaagttctagatctaactacctttcatagtggatttgtttggtttgaggttctggacgtgttggattt 13087226  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 13038171 - 13038220
Alignment:
Q  59 atataaagtccaagatctaactacctttcgtaatggatttgttcggtttg 108  Q
    ||||||||||  | ||||| ||||||||||||||||||||||| ||||||    
T  13038171 atataaagtcttaaatctatctacctttcgtaatggatttgtttggtttg 13038220  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 153331 - 153283
Alignment:
Q  59 atataaagtccaagatctaactacctttcgtaatggatttgttcggttt 107  Q
    ||||||||||| |||||||||||||||| | ||||| |||||| |||||    
T  153331 atataaagtcctagatctaactaccttttgaaatgggtttgtttggttt 153283  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 5537 - 5465
Alignment:
Q  59 atataaagtccaagatctaactacctttcgtaat-ggatttgttcggtttggtattctgaacgtgttggattt 130  Q
    ||||||||||| |||||||| |  |||||||||| |||||||||||||| |   ||||| |||||||||||||    
T  5537 atataaagtcctagatctaaatgtctttcgtaatgggatttgttcggttcgaggttctggacgtgttggattt 5465  T

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