View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20430_low_9 (Length: 313)

Name: NF20430_low_9
Description: NF20430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20430_low_9
NF20430_low_9
[»] chr1 (1 HSPs)
chr1 (1-298)||(40473457-40473754)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 40473457 - 40473754
Alignment:
Q  1 actcctcaggtgctcatacccaacaattcgaataggcgtgtagaataggtgtcttaaaattgctggagacaagcccttataaaggcaaagaggaccttgt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40473457 actcctcaggtgctcatacccaacaattcgaataggggtgtagaataggtgtcttaaaattgctggagacaagcccttataaaggcaaagaggaccttgt 40473556  T
Q  101 tgacgaataatgtctaggcctatttgaaatgcaccggttggacgagttgatgaaagtgactccccatggagttggagcctggttttgatcaagtctatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40473557 tgacgaataatgtctaggcctatttgaaatgcaccggttggacgagttgatgaaagtgactccccatggagttggagcctggttttgatcaagtctatgg 40473656  T
Q  201 ggaaagttgtggactcggccaccattgccgataatgatgttagtaaaatctttgtatgagtattgtcaacttcattgcctgatttcattggtacatac 298  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40473657 gaaaagttgtggactcggccaccattgccgataatgatgttagcaaaatctttgtatgagtattgtcaacttgattgcctgatttcattggtacatac 40473754  T

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